View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3539_low_25 (Length: 304)
Name: NF3539_low_25
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 37422290 - 37422018
Alignment:
| Q |
18 |
atacatatatcttatacatatccaacatcaataatacatcttcattggtatttgtgcttagaatcagagttaggtattcaaactctcgccaaaaacaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37422290 |
atacatatatcttatacatatccaacatcaataatacatcttc-ttggtatttgtgcttagaatcagagttaggtattcaaactctcgccaaaaacaagc |
37422192 |
T |
|
| Q |
118 |
accataacctctagccttatagagatacgcttttcttgac-nnnnnnnntatatttttatctaataagtaccattagtattcgcgcttagtattccacat |
216 |
Q |
| |
|
|||||||||||||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
37422191 |
accataacctctaggcttatagtgatatgtttttcttgacaaaaaaaaatatatttttatctaataagtaccattaatattcgcgcttagtattcccgat |
37422092 |
T |
|
| Q |
217 |
cctgatgattcatttgtatgagtatctattccttaatttattaaaattaatatgggaatagatacatatttatc |
290 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37422091 |
tcccacgattcatttgtatgagtatctattccttaatttattaaaattaatatgggaatagatacatatttatc |
37422018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University