View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_27 (Length: 297)
Name: NF3539_low_27
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_27 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 31240456 - 31240177
Alignment:
| Q |
18 |
gtcacaacaccaaatcctattctattaaattcctacaaatgttatagtaagcaaatataataggaaagctacgtagaagtggtacccataaataatgtgt |
117 |
Q |
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| T |
31240456 |
gtcacaacaccaaatcctattctattaaattcctacaaatgttatagtaagcaaatataataggaaagctacgtagaagtggtacccataaataatgtgt |
31240357 |
T |
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| Q |
118 |
caaagtcaaaatggtaaaagaagctgctttgattttgggttgtacataaaagcaagtgcaagcatcgaagataaacaaattagatttagtgtaaaggtag |
217 |
Q |
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| T |
31240356 |
caaagtcaaaatggtaaaagaagctgctttgattttgggttgtacataaaagcaagtgcaagcatcgaagataaacaaattagatttagtgtaaaggtag |
31240257 |
T |
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| Q |
218 |
cagggactaatgttgtggaaatcaacctgctacttcgtagggaagagctaatactctgatattaatgtatttatgatcat |
297 |
Q |
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| T |
31240256 |
cagggactaatgttgtggaaatcaacctgctacttcgtagagaagagctaatactctgatattaatgtatttatgatcat |
31240177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 99 - 297
Target Start/End: Complemental strand, 31231117 - 31230920
Alignment:
| Q |
99 |
gtacccataaataatgtgtcaaagtcaaaatggtaaaagaagctgctttgattttgggttgtacataaaagcaagtgcaagcatcgaagataaacaaatt |
198 |
Q |
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| T |
31231117 |
gtacccataaataatgtgtcaaagtcaaaatg-taaaagaagctactttgattttgggttgtacataagagcaagtgcaagcattgaagaaaaagaaatt |
31231019 |
T |
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| Q |
199 |
agatttagtgtaaaggtagcagggactaatgttgtggaaatcaacctgctacttcgtagggaagagctaatactctgatattaatgtatttatgatcat |
297 |
Q |
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| T |
31231018 |
aggattagtgtaaatgtggcaggggctaatgatgtagaattcaacctgccattttgtagtgaagagtcaatactccgatattaatgtatttatgatcat |
31230920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 31231246 - 31231179
Alignment:
| Q |
21 |
acaacaccaaatcctattctattaaattcctacaaatgttatagtaagcaaatataataggaaagctac |
89 |
Q |
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| T |
31231246 |
acaacaccaaatcctattccaataa-ttcctacaaactttataataagcaaatataataggtaagctac |
31231179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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