View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_30 (Length: 284)
Name: NF3539_low_30
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 14983841 - 14983612
Alignment:
| Q |
26 |
atccaacatagatctcaccaacaaacaaaactattagctatatgtacataacttt-tgcactactggtgcaacaccccatgatcccttcacattttgcgc |
124 |
Q |
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| T |
14983841 |
atccaacatagatgtcactaacaaacaaaactattagatatatatacataactttgtgcacggttggtgtaacaccccatgaccactttacattttgtgc |
14983742 |
T |
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| Q |
125 |
acaactcagccatagttgagtaaaaggctcataaattcatttcgcaaaaggctttacctctcaatgttctaacattatatcaccttcgtaatgagaaaca |
224 |
Q |
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| T |
14983741 |
acaactcaacaataattgagtaagagcctcataaattcaattagaagaaacctttac--ctcaacattctaacattacatcaccttcaaaagcataaatg |
14983644 |
T |
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| Q |
225 |
aaactgattggtatttgtgtatctcattctta |
256 |
Q |
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| T |
14983643 |
aaactgattggtatatttgtatcccattctta |
14983612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 18784352 - 18784204
Alignment:
| Q |
19 |
aacaaagatccaacatagatctcaccaacaaacaaaactattagctatatgtacataacttttgcactactggtgcaacacccc--atgatcccttcaca |
116 |
Q |
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| T |
18784352 |
aacaaagatccaacatagacgtcactaacaaacaaaactattagctatatgtacataacttctgc-ctgctggtgcaaaaccccatatgaccagttcata |
18784254 |
T |
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| Q |
117 |
ttttgcgcacaactcagccatagttgagtaaaaggctcataaattcattt |
166 |
Q |
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| T |
18784253 |
ttttgtgcataactcaaccataattgagtaaaagcctcctaaattcattt |
18784204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 48643797 - 48643738
Alignment:
| Q |
19 |
aacaaagatccaacatagatctcaccaacaaacaaaactattagctatatgtacataact |
78 |
Q |
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| T |
48643797 |
aacaaagatcctacatagatctcaccaacaaacaaaactattagctatatgtacaaaact |
48643738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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