View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_38 (Length: 252)
Name: NF3539_low_38
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_38 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 122 - 252
Target Start/End: Complemental strand, 34721565 - 34721435
Alignment:
| Q |
122 |
tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa |
221 |
Q |
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| T |
34721565 |
tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa |
34721466 |
T |
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| Q |
222 |
gtttgggaacaagacaatggccaagtttctt |
252 |
Q |
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| T |
34721465 |
gtttgggaacaagacaatggccaagtttctt |
34721435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 34727989 - 34727760
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
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| T |
34727989 |
acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc |
34727890 |
T |
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| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
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| T |
34727889 |
ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa |
34727790 |
T |
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| Q |
212 |
tgtcggggaagtttgggaacaagacaatgg |
241 |
Q |
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| T |
34727789 |
tgtcagggaagtttgggaacaagataatgg |
34727760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 18928737 - 18928976
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
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| T |
18928737 |
acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc |
18928836 |
T |
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| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
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| T |
18928837 |
ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa |
18928936 |
T |
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| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttct |
251 |
Q |
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| T |
18928937 |
tgtcagggaagattgggaacacgataatgggcaggtttct |
18928976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
| Q |
13 |
cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct |
112 |
Q |
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| T |
34717871 |
cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat |
34717772 |
T |
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| Q |
113 |
tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa |
173 |
Q |
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| T |
34717771 |
tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa |
34717711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 34716114 - 34715976
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg |
115 |
Q |
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| T |
34716114 |
acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg |
34716015 |
T |
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| Q |
116 |
gatatgtggcgagggagggatcggtaaaacaaccattgc |
154 |
Q |
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| T |
34716014 |
gatatggggcggaggagggatcggtaaaacaacaattgc |
34715976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 34730959 - 34730908
Alignment:
| Q |
200 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttct |
251 |
Q |
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| T |
34730959 |
tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttct |
34730908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt |
71 |
Q |
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| T |
18923835 |
acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt |
18923890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 18924027 - 18924071
Alignment:
| Q |
208 |
taaatgtcggggaagtttgggaacaagacaatggccaagtttctt |
252 |
Q |
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| T |
18924027 |
taaatgtccggcaagtttgggaacaagataatggcgaagtttctt |
18924071 |
T |
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