View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_4 (Length: 561)
Name: NF3539_low_4
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 554
Target Start/End: Original strand, 8135782 - 8136326
Alignment:
| Q |
11 |
aatgaggatgtaatgtagttataaaactcatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttat |
110 |
Q |
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| T |
8135782 |
aatgaggatgtaatgtcgttataaaactaatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttat |
8135881 |
T |
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| Q |
111 |
tggacgtcagtgtaaaactttttgcactctgcctnnnnnnncaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctg |
210 |
Q |
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| T |
8135882 |
tggacgtcagtgtaaaactttttgcactctgcctaaaaaaacaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctg |
8135981 |
T |
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| Q |
211 |
ttgctcaagattgggctattgaagccatgccaacgtttgtgtttgtgaaagaaggaaaaattttgggcaaagtggtaggagcaaagaaagatgagctgac |
310 |
Q |
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| T |
8135982 |
ttgctcaagattgggctattgaagccatgccaacgtttgtttttgtgaaagaaggaacaattttgggcaaagtggtaggagcaaagaaagatgagctgac |
8136081 |
T |
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| Q |
311 |
acagacaatagagaaacatgtggcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgcc |
410 |
Q |
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| T |
8136082 |
acagacaatagagaaacatgtggcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgcc |
8136181 |
T |
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| Q |
411 |
atctttattttcattattattatcttgtagtgaacg-nnnnnnnnnnnnnnnnngcaccttacaactttatatagatggtgacgtatcgtctatgacttc |
509 |
Q |
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| T |
8136182 |
atctttattttcattattattatcttgtagtgaacgttttttttttctttttttgcaccttacaactttatatagatggtgacgtatcgtctatgacttc |
8136281 |
T |
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| Q |
510 |
caagactttattccttcttgtcttaataatggtggatgatgatgt |
554 |
Q |
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| T |
8136282 |
caagactttattccttcttgtcttaataatggtggatgatgatgt |
8136326 |
T |
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