View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_low_41 (Length: 250)

Name: NF3539_low_41
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_low_41
NF3539_low_41
[»] chr1 (26 HSPs)
chr1 (1-238)||(52235046-52235283)
chr1 (42-178)||(52233729-52233865)
chr1 (42-129)||(39843193-39843280)
chr1 (60-168)||(50419697-50419805)
chr1 (93-167)||(21856044-21856118)
chr1 (42-168)||(39843444-39843569)
chr1 (79-168)||(17088595-17088684)
chr1 (61-168)||(2868147-2868253)
chr1 (93-176)||(5539809-5539892)
chr1 (93-168)||(18984120-18984195)
chr1 (79-170)||(23526657-23526748)
chr1 (93-168)||(29307411-29307486)
chr1 (108-174)||(8678536-8678602)
chr1 (94-168)||(29438931-29439005)
chr1 (93-166)||(15173099-15173172)
chr1 (94-167)||(33144389-33144462)
chr1 (61-166)||(39485068-39485172)
chr1 (94-167)||(44582530-44582603)
chr1 (94-167)||(50304441-50304514)
chr1 (79-168)||(50926697-50926786)
chr1 (88-168)||(4636435-4636515)
chr1 (94-166)||(17641840-17641912)
chr1 (93-165)||(25274760-25274832)
chr1 (61-168)||(30786772-30786879)
chr1 (93-133)||(33143953-33143993)
chr1 (94-166)||(50305256-50305328)
[»] chr5 (21 HSPs)
chr5 (1-167)||(12220581-12220747)
chr5 (66-134)||(25974148-25974216)
chr5 (71-168)||(22651759-22651856)
chr5 (93-168)||(24331560-24331635)
chr5 (93-168)||(41834529-41834604)
chr5 (94-176)||(15029780-15029862)
chr5 (94-168)||(15115563-15115637)
chr5 (72-133)||(25973874-25973935)
chr5 (108-168)||(164192-164252)
chr5 (93-173)||(2865224-2865304)
chr5 (93-177)||(5818921-5819005)
chr5 (93-133)||(19359172-19359212)
chr5 (108-168)||(24362320-24362380)
chr5 (93-168)||(5819398-5819473)
chr5 (93-168)||(18183438-18183513)
chr5 (93-168)||(19359605-19359680)
chr5 (93-166)||(15372342-15372415)
chr5 (79-168)||(17260676-17260765)
chr5 (79-168)||(18150180-18150269)
chr5 (94-166)||(4966819-4966891)
chr5 (93-133)||(8460966-8461006)
[»] chr2 (23 HSPs)
chr2 (43-166)||(3822924-3823047)
chr2 (28-166)||(3824113-3824251)
chr2 (3-129)||(5035903-5036029)
chr2 (72-168)||(28143478-28143574)
chr2 (93-168)||(20440500-20440575)
chr2 (93-168)||(20444750-20444825)
chr2 (61-168)||(31797216-31797322)
chr2 (94-168)||(42192714-42192788)
chr2 (88-172)||(35781127-35781211)
chr2 (28-168)||(43058334-43058474)
chr2 (61-168)||(42192241-42192347)
chr2 (94-132)||(2190547-2190585)
chr2 (94-168)||(24140145-24140219)
chr2 (94-168)||(38007951-38008025)
chr2 (94-168)||(43058802-43058876)
chr2 (93-166)||(8425829-8425902)
chr2 (93-178)||(11090512-11090597)
chr2 (93-178)||(11090989-11091074)
chr2 (93-174)||(22374315-22374396)
chr2 (93-133)||(1978144-1978184)
chr2 (93-133)||(7446815-7446855)
chr2 (94-166)||(15550676-15550748)
chr2 (58-166)||(20495196-20495304)
[»] chr4 (20 HSPs)
chr4 (1-164)||(31297067-31297230)
chr4 (72-168)||(51309954-51310050)
chr4 (93-167)||(24336233-24336307)
chr4 (43-168)||(23986521-23986646)
chr4 (94-166)||(10795782-10795854)
chr4 (66-134)||(51641273-51641341)
chr4 (93-168)||(15523236-15523311)
chr4 (93-168)||(23494912-23494987)
chr4 (93-168)||(24335762-24335837)
chr4 (93-168)||(25937671-25937746)
chr4 (61-168)||(40160095-40160201)
chr4 (116-167)||(44219377-44219428)
chr4 (61-168)||(46737094-46737200)
chr4 (94-172)||(18965137-18965215)
chr4 (94-168)||(55677429-55677503)
chr4 (94-167)||(34789854-34789927)
chr4 (108-173)||(51021279-51021344)
chr4 (94-167)||(54440573-54440646)
chr4 (93-133)||(22434215-22434255)
chr4 (93-133)||(25447705-25447745)
[»] chr6 (19 HSPs)
chr6 (42-166)||(24822856-24822979)
chr6 (93-168)||(23074000-23074075)
chr6 (94-168)||(1149466-1149540)
chr6 (97-166)||(31242809-31242878)
chr6 (93-168)||(1149901-1149976)
chr6 (93-168)||(10900399-10900474)
chr6 (93-168)||(12935158-12935233)
chr6 (93-168)||(18257606-18257681)
chr6 (93-168)||(22219822-22219897)
chr6 (113-168)||(22534214-22534269)
chr6 (94-168)||(835696-835770)
chr6 (94-168)||(20741101-20741175)
chr6 (79-168)||(835395-835484)
chr6 (79-168)||(31651963-31652052)
chr6 (93-166)||(32836010-32836083)
chr6 (93-133)||(10899975-10900015)
chr6 (93-133)||(11277051-11277091)
chr6 (93-133)||(18257173-18257213)
chr6 (92-168)||(31470316-31470392)
[»] scaffold0057 (2 HSPs)
scaffold0057 (43-168)||(61029-61154)
scaffold0057 (94-166)||(61928-62000)
[»] chr7 (16 HSPs)
chr7 (1-110)||(18535261-18535370)
chr7 (93-173)||(35289370-35289450)
chr7 (61-175)||(5333874-5333987)
chr7 (93-167)||(9393738-9393812)
chr7 (79-169)||(9394186-9394275)
chr7 (94-168)||(39137004-39137078)
chr7 (94-166)||(787257-787329)
chr7 (72-168)||(34595221-34595317)
chr7 (72-168)||(39136687-39136783)
chr7 (94-133)||(2658875-2658914)
chr7 (93-168)||(19590526-19590601)
chr7 (93-168)||(19590994-19591069)
chr7 (94-168)||(786783-786857)
chr7 (94-168)||(27245204-27245278)
chr7 (94-168)||(35288904-35288978)
chr7 (93-133)||(32005083-32005123)
[»] scaffold1432 (1 HSPs)
scaffold1432 (60-168)||(503-610)
[»] scaffold0007 (2 HSPs)
scaffold0007 (72-167)||(205816-205911)
scaffold0007 (79-168)||(210793-210882)
[»] chr3 (32 HSPs)
chr3 (93-168)||(29801885-29801960)
chr3 (61-167)||(36701534-36701640)
chr3 (61-177)||(12141129-12141245)
chr3 (94-168)||(36701107-36701181)
chr3 (94-168)||(49720372-49720446)
chr3 (94-168)||(55390068-55390142)
chr3 (93-166)||(25612446-25612519)
chr3 (93-166)||(26274570-26274643)
chr3 (93-174)||(31779121-31779202)
chr3 (94-170)||(37076145-37076221)
chr3 (72-168)||(49407797-49407892)
chr3 (61-168)||(330275-330381)
chr3 (93-168)||(20840561-20840636)
chr3 (93-168)||(32535432-32535507)
chr3 (61-168)||(50900966-50901072)
chr3 (94-168)||(14654200-14654274)
chr3 (94-168)||(39556047-39556121)
chr3 (94-168)||(40275094-40275168)
chr3 (94-168)||(46013423-46013497)
chr3 (94-168)||(52375802-52375876)
chr3 (93-166)||(27199705-27199778)
chr3 (95-168)||(37075687-37075760)
chr3 (93-174)||(49408251-49408332)
chr3 (94-167)||(52237288-52237361)
chr3 (94-166)||(22370599-22370671)
chr3 (92-168)||(23644463-23644539)
chr3 (96-168)||(27200164-27200236)
chr3 (108-168)||(30104483-30104543)
chr3 (118-166)||(40838655-40838703)
chr3 (94-166)||(51473327-51473399)
chr3 (61-168)||(51827958-51828064)
chr3 (171-211)||(53509203-53509243)
[»] chr8 (9 HSPs)
chr8 (94-168)||(9930127-9930201)
chr8 (93-166)||(9928912-9928985)
chr8 (61-168)||(15255854-15255960)
chr8 (93-168)||(41681135-41681210)
chr8 (93-131)||(4629835-4629873)
chr8 (94-168)||(7911087-7911161)
chr8 (94-168)||(16578109-16578183)
chr8 (94-168)||(28254897-28254971)
chr8 (95-168)||(33742923-33742996)
[»] scaffold0108 (1 HSPs)
scaffold0108 (72-168)||(15547-15643)
[»] scaffold1223 (1 HSPs)
scaffold1223 (93-133)||(1210-1250)
[»] scaffold0273 (1 HSPs)
scaffold0273 (93-133)||(4676-4716)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 52235046 - 52235283
Alignment:
Q  1 ccacataggtgttccattgccatatcaacgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgtt 100  Q
    ||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| |||||||||||| || || |||    
T  52235046 ccacataagtgttcctttgccatatcaacgtttttggagggtaaaatgagggttaggaccaaaattgcaagaaacatgatagtatagggactgcttcgtt 52235145  T
Q  101 cgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaataacttaaacgacttcttgtataa 200  Q
    ||||||||||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  52235146 cgatttgaaaagggcaggatcagtttcgtgagttggttaaaatctgaggatcaaaagtgtaattaagcctattaaataacttaaacgactttctgtataa 52235245  T
Q  201 tttagcctatattaagcacttgtttagatgtgtatttt 238  Q
    |||||| |||||||||||||||||||||||||||||||    
T  52235246 tttagcatatattaagcacttgtttagatgtgtatttt 52235283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 52233865 - 52233729
Alignment:
Q  42 taaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaa 141  Q
    ||||||| ||||||  | ||||||||||| |||||| |||||||||||| || ||||||||| |||||||||| || |||| |||||| ||||| |||||    
T  52233865 taaaatgggggttatgaccaaaattgcaaaaaacatgatagtatagggactgctttgttcgacttgaaaagggtagcaccaatttcgtaagttggttaaa 52233766  T
Q  142 attcgagaatcaaaagtgtaattaagcttattaaata 178  Q
    |  |||| |  |||||||||||||||| |||| ||||    
T  52233765 acccgaggacgaaaagtgtaattaagcctatttaata 52233729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 39843280 - 39843193
Alignment:
Q  42 taaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgt 129  Q
    ||||||| |||| || | ||||| ||||| |||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  39843280 taaaatgggggtaaggaccaaaagtgcaaaaaacatgatagtatagggaccgttttgttcgatttgaaaaaggcaggaccagtttcgt 39843193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 50419697 - 50419805
Alignment:
Q  60 caaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtg 159  Q
    ||||| ||||| |||||| |||||| |||||  ||||||||| |||| |||| |||||||||| |||||||||||| |  |||| |||  | ||||||||    
T  50419697 caaaagtgcaaaaaacatgatagtacagggaccgttttgttcaattttaaaaaggcaggaccaatttcgtgagttggtctaaatgcgatgaccaaaagtg 50419796  T
Q  160 taattaagc 168  Q
     ||||||||    
T  50419797 caattaagc 50419805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 21856118 - 21856044
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    |||||||||  ||| |||||||||||||||||||||||||| | | ||||  |||| | ||||||||||||||||    
T  21856118 gttttgttctgttttaaaagggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaattaag 21856044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 39843444 - 39843569
Alignment:
Q  42 taaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaa 141  Q
    |||||||||||| || | ||||| ||||  |||||| |||||||| ||| |  || |||||||||||||| |||||||||| |||||||||||| |  ||    
T  39843444 taaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcaggaccaatttcgtgagttggtctaa 39843542  T
Q  142 attcgagaatcaaaagtgtaattaagc 168  Q
    || |||| | | |||||||||| ||||    
T  39843543 atgcgaggaccgaaagtgtaataaagc 39843569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 17088595 - 17088684
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| ||||||  |||||||| |||||||||  |||| ||||| ||||||||| |||| |||||  ||| | |||||||||||||||||    
T  17088595 atagtttagggacggttttgtttgatttgaaagaggcatgaccattttcgtgagctgttcaaaatgagaggaccaaaagtgtaattaagc 17088684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 2868147 - 2868253
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || ||||||| ||||||| |||| | |||||  ||| |||||||||||    
T  2868147 aaaactgcaaaaaacata-tagtgtagggacgattttgttcgatttaaaagaggtaggaccattttcgtgtgttggtcaaaatgtgaggatcaaaagtgt 2868245  T
Q  161 aattaagc 168  Q
    ||||||||    
T  2868246 aattaagc 2868253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 5539892 - 5539809
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaa 176  Q
    |||||||||  ||| ||||||||||||||| |||||||||| |   ||||  |||| | ||||||||||||||||| |||||||    
T  5539892 gttttgttctgttttaaaagggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatattaaa 5539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 18984195 - 18984120
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  18984195 gttttgttctgttttaaaagggcaggaccagtttcgtgagtagaccaaaacacgaggaccaaaagtgtaattaagc 18984120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 23526748 - 23526657
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagctt 170  Q
    ||||| |||||||  ||||||||||||| |||  |||||||||| ||||||||| || | |||||  ||| | ||||||||||| |||||||    
T  23526748 atagtctagggatgattttgttcgatttaaaagaggcaggaccattttcgtgagctggtcaaaatgtgaggaccaaaagtgtaactaagctt 23526657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 29307411 - 29307486
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| | | ||||  |||| | |||||||| ||||||||    
T  29307411 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgcaattaagc 29307486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 8678602 - 8678536
Alignment:
Q  108 aaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatta 174  Q
    |||||||||||||||||||||||||| |   ||||  |||| | ||||||||||||||||| |||||    
T  8678602 aaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatatta 8678536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 29439005 - 29438931
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||||||||||    
T  29439005 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaagc 29438931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 15173172 - 15173099
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||| |||| ||||||||||||| |||||||||||| |   ||||  |||| | |||||||||||||||    
T  15173172 gttttgttcaattttaaaagggcaggactagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaa 15173099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 33144389 - 33144462
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | ||||||||||||||||    
T  33144389 ttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaag 33144462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 39485172 - 39485068
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   |||||||||||||||||  || ||||||| ||||||||| |  | ||||| |||| | |||||||||    
T  39485172 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttgaaagaggtaggaccattttcgtgagctagtcaaaatgcgaggaccaaaagtgt 39485074  T
Q  161 aattaa 166  Q
    ||||||    
T  39485073 aattaa 39485068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 44582530 - 44582603
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    |||||||||||||||||| |  | ||||| |||||||||||| | |||||   |||| ||||||||||||||||    
T  44582530 ttttgttcgatttgaaaatgatatgaccattttcgtgagttgatcaaaatggtagaaccaaaagtgtaattaag 44582603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 50304514 - 50304441
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||| |||  || | ||||| |||||||||||| | ||||| |||| | ||||||||||||||||    
T  50304514 ttttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaag 50304441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 50926697 - 50926786
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| ||||||  ||||||||||||||||||  | | |||||| ||||||||| || | ||||| |||  | |||||||||||||||||    
T  50926697 atagtttagggacggttttgttcgatttgaaagagacgggaccattttcgtgagctggtcaaaatgcgatgaccaaaagtgtaattaagc 50926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 4636435 - 4636515
Alignment:
Q  88 ggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||| |||||||||  ||| |||||||||||| ||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  4636435 ggatcgttttgttctgttttaaaagggcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 4636515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 17641840 - 17641912
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||  || | ||||| |||||||||||| | ||||| |||| | |||||||||||||||    
T  17641840 ttttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 17641912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 25274832 - 25274760
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaatta 165  Q
    ||||||||||||||||||  |||| ||||| ||||||||| || | ||||| |||| | |||||||| |||||    
T  25274832 gttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgcaatta 25274760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 30786879 - 30786772
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagttt-cgtgagttgtttaaaattcgagaatcaaaagtg 159  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || ||||||| ||| ||||||||| | ||||| | |||| ||||||||    
T  30786879 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttaaaagaggtaggaccaattttcgtgagttggtcaaaatgcaagaaccaaaagtg 30786781  T
Q  160 taattaagc 168  Q
    |||||||||    
T  30786780 taattaagc 30786772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 33143993 - 33143953
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  33143993 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 33143953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 50305256 - 50305328
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||| |  ||||||| |||| ||||||| |||||||   |||| |||||||||||||||    
T  50305256 ttttgttcgatttaaaaaagataggaccattttcatgagttggttaaaatggtagaaccaaaagtgtaattaa 50305328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 12220581 - 12220747
Alignment:
Q  1 ccacataggtgttccattgccatatcaacgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgtt 100  Q
    ||||||| ||||| | ||||||||||| | ||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  12220581 ccacatatgtgtttctttgccatatcagcatttttggagggtaaaatgagggttaggatcaaaattgcaagaaacatgatagtatagggactgttttgtt 12220680  T
Q  101 cgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    |||||||||||| ||| ||||| |||||| ||||| ||||||  ||| |||||||| | ||||||||    
T  12220681 cgatttgaaaagagcatgaccaatttcgttagttggttaaaacccgaaaatcaaaaatataattaag 12220747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 25974148 - 25974216
Alignment:
Q  66 tgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagtt 134  Q
    ||||| |||||| ||| ||||||||||  ||||||||||||||||| |||||||||| |||||||||||    
T  25974148 tgcaaaaaacatgatactatagggattactttgttcgatttgaaaaaggcaggaccattttcgtgagtt 25974216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 22651759 - 22651856
Alignment:
Q  71 gaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| || |||   |||||||||||||||||| ||||| |||| ||||||||| || | ||||| |||| |  ||||||||||||||||    
T  22651759 gaaacataatagtttatggacgattttgttcgatttgaaaaaggcagaaccattttcgtgagctggtcaaaatgcgaggacaaaaagtgtaattaagc 22651856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 24331635 - 24331560
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| | | ||||  |||| | |||||||||||||||||    
T  24331635 gttttgttctgttttaaaagggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaattaagc 24331560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 41834529 - 41834604
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||| |||||  |||||||||| ||||||||| || | ||||| |||| | |||||||||||||||||    
T  41834529 gttttgttcgatctgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgtaattaagc 41834604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 15029780 - 15029862
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaa 176  Q
    ||||||||||||| |||| || | ||||| |||||||||||| | |||||  ||| | ||||||||||||||||| |||||||    
T  15029780 ttttgttcgatttaaaaaaggtaagaccattttcgtgagttggtcaaaatgggaggaccaaaagtgtaattaagcctattaaa 15029862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 15115563 - 15115637
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | |||||  ||| |||||||||||||||||||    
T  15115563 ttttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggatcaaaagtgtaattaagc 15115637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 25973935 - 25973874
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||| ||||||| |||| |||||||||||||| ||||| |||| ||||| ||||||||||    
T  25973935 aaacatgatagtatggggactgttttgttcgattcgaaaaaggcatgaccaatttcgtgagt 25973874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 164252 - 164192
Alignment:
Q  108 aaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||||||||||||||||| | | ||||  |||| | |||||||||||||||||    
T  164252 aaaagggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagc 164192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 2865224 - 2865304
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatt 173  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | ||||||||||||||||| ||||    
T  2865224 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 2865304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 5819005 - 5818921
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaat 177  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | ||||||||||||||| | ||||||||    
T  5819005 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctattaaat 5818921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 19359212 - 19359172
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  19359212 gttttgttctattttaaaagggcaggaccagtttcgtgagt 19359172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 24362320 - 24362380
Alignment:
Q  108 aaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||||||||||||||||| |   ||||| |||| | |||||||||||||||||    
T  24362320 aaaagggcaggaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagc 24362380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 5819398 - 5819473
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  5819398 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 5819473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 18183438 - 18183513
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  18183438 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 18183513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 19359605 - 19359680
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  19359605 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 19359680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 15372342 - 15372415
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||    
T  15372342 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaa 15372415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 17260676 - 17260765
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| ||||||| ||||||||||||||||||  || || | || |||||||| ||| | ||||| |||| | |||||||| ||||||||    
T  17260676 atagtttagggatggttttgttcgatttgaaagaggtagaatcattttcgtgaattggtcaaaatgcgaggaccaaaagtgcaattaagc 17260765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 18150180 - 18150269
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| |||||||  ||||||||||||| |||  || ||||||| |||||||||||  | ||||| | || |||| ||||||||||||||    
T  18150180 atagtttagggatgattttgttcgatttaaaagaggtaggaccaatttcgtgagtttgtcaaaatacaaggatcacaagtgtaattaagc 18150269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 4966891 - 4966819
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||  ||||| || | |||||||||||| | ||||| |||| | |||||||||||||||    
T  4966891 ttttgttcgatttaaaagaggcagtactattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 4966819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 8461006 - 8460966
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  8461006 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 8460966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 3823047 - 3822924
Alignment:
Q  43 aaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaa 142  Q
    |||||| ||||||  | ||||||||||| |||||| |||||||||||| || |||||||| ||| |||||||||||| || |||| ||||||| ||||||    
T  3823047 aaaatgggggttatgaccaaaattgcaaaaaacatgatagtatagggagtgctttgttcggtttaaaaagggcaggatcaatttcatgagttggttaaaa 3822948  T
Q  143 ttcgagaatcaaaagtgtaattaa 166  Q
    | |||| | |||||||||||||||    
T  3822947 tgcgaggaccaaaagtgtaattaa 3822924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 3824113 - 3824251
Alignment:
Q  28 acgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttc 127  Q
    |||||||||| |  ||||||| |||||||||  |||||||||| |||||| |||| ||| | | ||||||||||||||| ||||||||| ||||| ||||    
T  3824113 acgtttttggaggataaaatgggggttagaactaaaattgcaaaaaacatgatagcatatgaactgttttgttcgatttaaaaagggcatgaccaatttc 3824212  T
Q  128 gtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||| ||||||| |||  | ||||||| |||||||    
T  3824213 gtgagttggttaaaatgcgatgaccaaaagtataattaa 3824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 5036029 - 5035903
Alignment:
Q  3 acataggtgttccattgccatatcaacgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcg 102  Q
    ||||||||||||| ||||||||| | ||||||||| | |||||||||||||||  || |||| ||||| ||| || ||||| ||||||  ||||||||||    
T  5036029 acataggtgttcctttgccatataagcgtttttggagggtaaaatgagggttatgattaaaactgcaaaaaatatgatagtttagggacggttttgttcg 5035930  T
Q  103 atttgaaaagggcaggaccagtttcgt 129  Q
    |||| |||| | |||||||| ||||||    
T  5035929 atttaaaaaagacaggaccattttcgt 5035903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 28143478 - 28143574
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| ||||| ||||||   |||||||||||||||||  |||||||||| ||||||||| || | ||||| |||| | |||||||| ||||||||    
T  28143478 aaacatgatagtttagggacgattttgttcgatttgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgaaattaagc 28143574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 20440500 - 20440575
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| ||||||||||||||||||||||||||||   ||||  |||| | |||||||||||||||||    
T  20440500 gttttgttctgttttaaaagggcaggaccagtttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagc 20440575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 20444825 - 20444750
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| ||||||||||||||||||||||||||||   ||||  |||| | |||||||||||||||||    
T  20444825 gttttgttctgttttaaaagggcaggaccagtttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagc 20444750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 31797216 - 31797322
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||  ||||||||||||||||||  |||| ||||| ||||||||| || | |||||  ||| | |||||||||    
T  31797216 aaaactgcaaaaaacata-tagtttagggacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgtgaggaccaaaagtgt 31797314  T
Q  161 aattaagc 168  Q
    ||||||||    
T  31797315 aattaagc 31797322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 42192714 - 42192788
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| |||| | |||||||||||||||||    
T  42192714 ttttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaagc 42192788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 35781127 - 35781211
Alignment:
Q  88 ggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttat 172  Q
    |||| |||||||||  ||| ||||||||| ||||| |||||||||| |   ||||  |||| |||||||||||||||||||||||    
T  35781127 ggatagttttgttctgttttaaaagggcatgaccattttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcttat 35781211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 43058474 - 43058334
Alignment:
Q  28 acgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttc 127  Q
    |||||||||| || ||||||| ||| |||||  |||| ||||| ||| || ||| |  | |||  |||||||||  ||| |||| ||||||||||||||     
T  43058474 acgtttttggagaataaaatggggggtagaacgaaaaatgcaacaaaaatgataattgaaggaccgttttgttctgttttaaaaaggcaggaccagttta 43058375  T
Q  128 gtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||   ||||  |||| |||||||||||||||||||    
T  43058374 gtgagttggccaaaacacgaggatcaaaagtgtaattaagc 43058334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 42192347 - 42192241
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || ||||||| |||||||||||| | |||||  ||| | |||||||||    
T  42192347 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgt 42192249  T
Q  161 aattaagc 168  Q
    ||||||||    
T  42192248 aattaagc 42192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 2190547 - 2190585
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgag 132  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  2190547 ttttgttcgatttgaaaaaggcaggaccaatttcgtgag 2190585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 24140145 - 24140219
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||| ||||| |||| || ||||||| |||||||||||| | || || |||| | |||||||||||||||||    
T  24140145 ttttgtttgatttaaaaaaggtaggaccattttcgtgagttggtcaagatgcgaggaacaaaagtgtaattaagc 24140219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 38008025 - 38007951
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||||||||||    
T  38008025 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaagc 38007951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 43058802 - 43058876
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||  ||| ||||| |||||||||||||||||||| |   ||||  |||| |||||||||||||||||||    
T  43058802 ttttgttctgttttaaaagagcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 43058876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 8425829 - 8425902
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||| |||| ||||||||||||||| |||||||||| |   ||||  | |||| |||||||||||||||    
T  8425829 gttttgttctattttaaaagggcaggaccaatttcgtgagtagaccaaaacacaagaaccaaaagtgtaattaa 8425902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 11090597 - 11090512
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaata 178  Q
    |||||||||  ||| ||||||||||||| |||||||||||| |   ||||  |||| | ||||||||||||||| | |||||||||    
T  11090597 gttttgttctgttttaaaagggcaggacaagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctattaaata 11090512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 11090989 - 11091074
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttattaaata 178  Q
    |||||||||  ||| ||||||||| |||||||||||||||| |   ||||  |||| | ||||||||||||||||| |||| ||||    
T  11090989 gttttgttctgttttaaaagggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatttaata 11091074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 22374396 - 22374315
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatta 174  Q
    |||||||||  ||| ||||||||| |||||||||||||||| |   ||||  |||| | ||||||||||||||||| |||||    
T  22374396 gttttgttctgttttaaaagggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 22374315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 1978184 - 1978144
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  1978184 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 1978144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 7446815 - 7446855
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  7446815 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 7446855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 15550748 - 15550676
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | | ||| | || |||||||||||||||||    
T  15550748 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcagaatgcaaggatcaaaagtgtaattaa 15550676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 20495304 - 20495196
Alignment:
Q  58 atcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaag 157  Q
    ||||||| ||||| ||| || ||||| ||||||   ||||||| ||||| |||  |||| || || |||||||||||| | ||||| |||||| ||||||    
T  20495304 atcaaaagtgcaaaaaatatgatagtttagggacgattttgttagatttaaaagaggcatgatcattttcgtgagttggtcaaaatgcgagaaccaaaag 20495205  T
Q  158 tgtaattaa 166  Q
    || ||||||    
T  20495204 tgaaattaa 20495196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31297067 - 31297230
Alignment:
Q  1 ccacataggtgttccattgccatatcaacgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgtt 100  Q
    ||||||||||||||  ||||||| ||| ||||||||| | ||||||||  |||||  || |||||||||| |||||  |||| ||||||     ||||||    
T  31297067 ccacataggtgttcatttgccatctcagcgtttttggagggtaaaatggaggttatgatgaaaattgcaaaaaacaagatagcataggggcaactttgtt 31297166  T
Q  101 cgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaatt 164  Q
    |||||| |||| |||| ||||| |||||||||||| || |||| |||||| |||||||| ||||    
T  31297167 cgatttaaaaaaggcatgaccaatttcgtgagttggtttaaatacgagaaccaaaagtgcaatt 31297230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 51309954 - 51310050
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| ||||| |||||| |||||||||||||||||||  |||| ||||| ||||||||| || | ||||| |||| | |||||||| ||||||||    
T  51309954 aaacatgatagtttagggactgttttgttcgatttgaaagaggcatgaccattttcgtgagctggtaaaaatgcgaggaccaaaagtgcaattaagc 51310050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 24336233 - 24336307
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||||||||  |||||||||| ||||||||| |  | ||||| |||| ||||||||||||||||||    
T  24336233 gttttgttcgatttgaaagaggcaggaccattttcgtgagcttgtcaaaatgcgaggatcaaaagtgtaattaag 24336307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 23986646 - 23986521
Alignment:
Q  43 aaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaa 142  Q
    |||||| ||||||| |  |||| ||||| |||||| ||||| ||||||  ||||||||||||||||||  | || ||||| ||||||||| || | ||||    
T  23986646 aaaatgggggttaggactaaaactgcaaaaaacatgatagtttagggacagttttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaa 23986547  T
Q  143 ttcgagaatcaaaagtgtaattaagc 168  Q
    |  ||| | |||||||| ||||||||    
T  23986546 tgtgaggaccaaaagtgaaattaagc 23986521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 10795782 - 10795854
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||||||||||||  |  ||||||| ||||||||| |||| ||||| || | |||||||||||||||||    
T  10795782 ttttgttcgatttgaaagagagaggaccaatttcgtgagctgttcaaaatgcggggatcaaaagtgtaattaa 10795854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 51641273 - 51641341
Alignment:
Q  66 tgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagtt 134  Q
    ||||| |||||| | ||||||||||||| |||||| ||||| |||| ||||||| || |||||||||||    
T  51641273 tgcaaaaaacatgacagtatagggattgctttgtttgatttaaaaaaggcaggatcaatttcgtgagtt 51641341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 15523311 - 15523236
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  15523311 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 15523236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 23494912 - 23494987
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  23494912 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 23494987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 24335837 - 24335762
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||||||||  |||| ||||| ||||||||| || | ||||| | || ||| |||||||||||||||    
T  24335837 gttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcaaggatcgaaagtgtaattaagc 24335762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 25937746 - 25937671
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |  |||||  |||| | ||||| |||||||||||    
T  25937746 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggctaaaacacgaggaccaaaaatgtaattaagc 25937671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 40160201 - 40160095
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||  |||||||||||||| |||  |||| ||| | ||||||||| || ||||||| || | ||||||| |||    
T  40160201 aaaactgcaaaaaacata-tagtttagggacggttttgttcgatttaaaagaggcatgactattttcgtgagctggttaaaatgcggggatcaaaaatgt 40160103  T
Q  161 aattaagc 168  Q
    ||||||||    
T  40160102 aattaagc 40160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 44219428 - 44219377
Alignment:
Q  116 aggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||| |||||||||||| ||||||| |||| | ||||||||||||||||    
T  44219428 aggaccaatttcgtgagttggttaaaatacgaggaccaaaagtgtaattaag 44219377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 46737094 - 46737200
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||    
T  46737094 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgt 46737192  T
Q  161 aattaagc 168  Q
    ||||||||    
T  46737193 aattaagc 46737200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 18965215 - 18965137
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttat 172  Q
    |||||||||||||||||  |||| ||||  ||||||||||   |||||||  ||| ||||||| |||||||||||||||    
T  18965215 ttttgttcgatttgaaagaggcaagaccgttttcgtgagtaagttaaaatgtgaggatcaaaaatgtaattaagcttat 18965137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 55677429 - 55677503
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||||||||||    
T  55677429 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatacaaggaccaaaagtgtaattaagc 55677503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 34789854 - 34789927
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | ||||||||||||||||    
T  34789854 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaag 34789927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 51021279 - 51021344
Alignment:
Q  108 aaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatt 173  Q
    ||||||||||||||| |||||||||| |   ||||  |||| ||||||||||||||||||| ||||    
T  51021279 aaaagggcaggaccaatttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 51021344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 54440646 - 54440573
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | ||||||||||||||||    
T  54440646 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaag 54440573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 22434255 - 22434215
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  22434255 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 22434215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 25447705 - 25447745
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  25447705 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 25447745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 24822979 - 24822856
Alignment:
Q  42 taaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaa 141  Q
    |||||||||||| || | ||||| ||||| |||||| ||| ||||| ||  | ||||||||||||||||| ||||| |||| ||||||||  || |||||    
T  24822979 taaaatgagggtaaggaccaaaagtgcaa-aaacatgataatatagagaccgctttgttcgatttgaaaaaggcagcaccattttcgtgaactgattaaa 24822881  T
Q  142 attcgagaatcaaaagtgtaattaa 166  Q
    || |||||| |||||||||||||||    
T  24822880 atccgagaaccaaaagtgtaattaa 24822856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 23074075 - 23074000
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||| |||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  23074075 gttttgttctattttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 23074000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 1149540 - 1149466
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| |||||||||||||||||||    
T  1149540 ttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 1149466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 31242878 - 31242809
Alignment:
Q  97 tgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||||| |||| ||||||| || |||||||||||| | ||||| ||||  ||||||||||||||||    
T  31242878 tgttcgatttaaaaaaggcaggatcattttcgtgagttggtcaaaatgcgagggtcaaaagtgtaattaa 31242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 1149901 - 1149976
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||| |||| ||||||||| |||||||||| ||||| |  |||||  |||| | |||||||||||||||||    
T  1149901 gttttgttctattttaaaagggcatgaccagtttcatgagtaggctaaaacacgaggaccaaaagtgtaattaagc 1149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 10900399 - 10900474
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| ||||||||| |||||||||||||||| |   ||||| |||| | |||||||||||||||||    
T  10900399 gttttgttctgttttaaaagggcatgaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagc 10900474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 12935233 - 12935158
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  12935233 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 12935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 18257606 - 18257681
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| | | ||||  |||| | ||||||| |||||||||    
T  18257606 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtataattaagc 18257681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 22219822 - 22219897
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  22219822 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 22219897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 22534214 - 22534269
Alignment:
Q  113 ggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||| |||||||||||| | ||||| |||| | |||||||||||||||||    
T  22534214 ggcaggaccattttcgtgagttggtcaaaatacgaggaccaaaagtgtaattaagc 22534269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 835696 - 835770
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||||||||  |||||||||| |||||| || || | ||||| |||| | |||||||| ||||||||    
T  835696 ttttgttcgatttgaaagaggcaggaccattttcgtaagctgctaaaaatgcgaggaccaaaagtgcaattaagc 835770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 20741175 - 20741101
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  20741175 ttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 20741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 835484 - 835395
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| ||||||  ||||||||||||||||||  |||| ||||| ||||||||| || | |||||  ||| | |||||||| ||||||||    
T  835484 atagtttagggacagttttgttcgatttgaaagaggcaagaccattttcgtgagctgctaaaaatgtgaggaccaaaagtgcaattaagc 835395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 31652052 - 31651963
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||| |||| ||||||||||||||||||||   | | |||| ||| |||| ||| | ||||| | ||||| ||||||||||||||||    
T  31652052 atagtattgggactgttttgttcgatttgaaaaaaacggaaccaattttgtgaattggtcaaaatgcaagaattaaaagtgtaattaagc 31651963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 32836083 - 32836010
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||||||||  |||||||||  ||| ||||| || | ||||| | || |||||||||||||||||    
T  32836083 gttttgttcgatttgaaagaggcaggaccgtttttgtgagctggtcaaaatgcaaggatcaaaagtgtaattaa 32836010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 10900015 - 10899975
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  10900015 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 10899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 11277051 - 11277091
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  11277051 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 11277091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 18257213 - 18257173
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  18257213 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 18257173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 31470392 - 31470316
Alignment:
Q  92 tgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||  ||| ||||| ||| |||||||||||||||| |   ||||  |||| |||||||||||||||||||    
T  31470392 tgttttgttctgttttaaaagagcatgaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 31470316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 61154 - 61029
Alignment:
Q  43 aaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaa 142  Q
    |||||||||||||  | ||||||||||| || ||| |||||||||||| || ||||||| |||| |||| ||||||| || |||||||||| |   ||||    
T  61154 aaaatgagggttatgaccaaaattgcaaaaagcatgatagtatagggactgctttgttctattttaaaatggcaggatcattttcgtgagtaggccaaaa 61055  T
Q  143 ttcgagaatcaaaagtgtaattaagc 168  Q
      |||| |||||||||||| ||||||    
T  61054 cacgaggatcaaaagtgtacttaagc 61029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 61928 - 62000
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||| |||| ||||||| ||||||| |||||||||| |   ||||  |||| |||||||||||||||||    
T  61928 ttttgttctattttaaaagggtaggaccattttcgtgagtagaccaaaacacgaggatcaaaagtgtaattaa 62000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18535261 - 18535370
Alignment:
Q  1 ccacataggtgttccattgccatatcaacgtttttggggagtaaaatgagggttagaatcaaaattgcaagaaacataatagtatagggattgttttgtt 100  Q
    |||||| |||||||  |||||| |||||| |||||||   ||||| || ||||||||||||||| ||||| ||| || ||||| ||||||  ||||||||    
T  18535261 ccacatgggtgttcttttgccacatcaacatttttggatggtaaattgggggttagaatcaaaagtgcaaaaaatattatagtttagggacggttttgtt 18535360  T
Q  101 cgatttgaaa 110  Q
    ||||||||||    
T  18535361 cgatttgaaa 18535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 35289370 - 35289450
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatt 173  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| ||||||||||||||||||| ||||    
T  35289370 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 35289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 5333987 - 5333874
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || | ||||| |||||||||||| | ||||| | || |||||||||||    
T  5333987 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttaaaagaggtacgaccattttcgtgagttggtcaaaatgcaaggatcaaaagtgt 5333889  T
Q  161 aattaagcttattaa 175  Q
    |||||||| ||||||    
T  5333888 aattaagcctattaa 5333874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 9393812 - 9393738
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||||||||  |||| ||| | ||||||||| || | ||||| |||| ||||||||||||||||||    
T  9393812 gttttgttcgatttgaaagaggcaagacaattttcgtgagctgatcaaaatgcgaggatcaaaagtgtaattaag 9393738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 9394186 - 9394275
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagct 169  Q
    ||||| ||||||  ||||||||||||||||||| || ||||||| ||| ||||| || | ||||| |||| | ||||||||||||||||||    
T  9394186 atagtttagggacggttttgttcgatttgaaaaaggtaggaccatttttgtgagctggtcaaaatgcgag-accaaaagtgtaattaagct 9394275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 39137004 - 39137078
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  |||||||||| |||||||||  | | ||||| |||| |||||||||||||||||||    
T  39137004 ttttgttcgatttaaaagaggcaggaccattttcgtgagcgggtcaaaatacgaggatcaaaagtgtaattaagc 39137078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 787257 - 787329
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| |||| | |||||||||||||||    
T  787257 ttttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatacgagcaccaaaagtgtaattaa 787329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 34595221 - 34595317
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| ||||| ||||||   ||||||||||||| |||   ||||||||| |||||||||||| | |||||  ||| | |||||||||||||||||    
T  34595221 aaacatgatagtttagggacgattttgttcgatttaaaagatgcaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaagc 34595317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 39136783 - 39136687
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| ||||| ||||||   |||||||||||||||||  | ||| |||| ||||||||| || | ||||| | || |||||||||||||||||||    
T  39136783 aaacatgatagtttagggacgattttgttcgatttgaaagagtcagaaccattttcgtgagctggtcaaaatgcaaggatcaaaagtgtaattaagc 39136687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 2658914 - 2658875
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  2658914 ttttgttctattttaaaagggcaggaccagtttcgtgagt 2658875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 19590601 - 19590526
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  19590601 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 19590526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 19590994 - 19591069
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  19590994 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgagtaccaaaagtgtaattaagc 19591069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 786857 - 786783
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||| || | ||||| |||||||||||| | |||||   || |||||||||||||||||||    
T  786857 ttttgttcgatttaaaaaaggtatgaccattttcgtgagttggtcaaaatggaaggatcaaaagtgtaattaagc 786783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 27245278 - 27245204
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||||||||||    
T  27245278 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaagc 27245204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 35288978 - 35288904
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||  ||| |||||||||||||||||||||||||| |   ||||| |||  | |||||||||||||||||    
T  35288978 ttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaatacgatgaccaaaagtgtaattaagc 35288904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 32005083 - 32005123
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    ||||||||| |||| ||||||||| ||||||||||||||||    
T  32005083 gttttgttctattttaaaagggcatgaccagtttcgtgagt 32005123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 503 - 610
Alignment:
Q  60 caaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtg 159  Q
    ||||| ||||| ||||||| |||| ||| || |||||||||||||||||||  |||| ||||| ||||||||| |  | ||||| |||| ||||||||||    
T  503 caaaactgcaaaaaacata-tagtttagagactgttttgttcgatttgaaagaggcaagaccattttcgtgagctcgtcaaaatgcgaggatcaaaagtg 601  T
Q  160 taattaagc 168  Q
    |||||||||    
T  602 taattaagc 610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 205816 - 205911
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    |||||| ||||| ||||||  ||||||||||||||||||  |||||||||| |||||||||||| | |||||  ||| |  |||||||||||||||    
T  205816 aaacatgatagtttagggacggttttgttcgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgtgaggactaaaagtgtaattaag 205911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 210793 - 210882
Alignment:
Q  79 atagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||| ||||||  ||||||||||||||||||  |||||||||| |||| ||||||| | |||||  ||| | |||||||||||||||||    
T  210793 atagtttagggacggttttgttcgatttgaaagaggcaggaccattttcatgagttggtcaaaatgtgaggaccaaaagtgtaattaagc 210882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 29801885 - 29801960
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||| |||| |||||||||||||||||||    
T  29801885 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaatacgaggatcaaaagtgtaattaagc 29801960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 36701534 - 36701640
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| |||||| ||||| |||||||  |||||||||||||||||  | || ||||| ||||||||| || | ||||| |||| | |||||||||    
T  36701534 aaaactgcaaaaaacatgatagtttagggatgattttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgt 36701633  T
Q  161 aattaag 167  Q
    |||||||    
T  36701634 aattaag 36701640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 12141129 - 12141245
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| |||||| ||||| ||| ||| ||||||||||||||||||  || ||||||| || |||||  || | ||||| |||| | |||||||||    
T  12141129 aaaactgcaaaaaacatgatagtttagagatggttttgttcgatttgaaagaggtaggaccatttacgtgatctgataaaaatgcgaggaacaaaagtgt 12141228  T
Q  161 aattaagcttattaaat 177  Q
    ||||||||  |||||||    
T  12141229 aattaagccaattaaat 12141245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 36701181 - 36701107
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||||||||  |||| || || |||||||||||| | ||||| |||| | |||||||||||||||||    
T  36701181 ttttgttcgatttgaaagaggcatgatcattttcgtgagttgatcaaaatgcgaggaccaaaagtgtaattaagc 36701107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 49720446 - 49720372
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || |||||||||||||||||||    
T  49720446 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaagc 49720372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 55390068 - 55390142
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||| ||||| |||| || ||||||| |||||||| ||| ||||||| |||| | |||||||||||||||||    
T  55390068 ttttgtttgatttaaaaaaggtaggaccattttcgtgaattggttaaaatgcgaggaccaaaagtgtaattaagc 55390142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 25612446 - 25612519
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||| |||| ||||||||||||||| |||||||||| | | ||||  |||| | |||||||||||||||    
T  25612446 gttttgttctattttaaaagggcaggaccaatttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaa 25612519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 26274643 - 26274570
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||||  ||| |||||||||||||||||||||||||| ||  ||||| | || ||||||| |||||||||    
T  26274643 gttttgttctgttttaaaagggcaggaccagtttcgtgagtagtccaaaatacaaggatcaaaaatgtaattaa 26274570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 31779121 - 31779202
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatta 174  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | ||||||||||||||||| |||||    
T  31779121 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 31779202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 37076145 - 37076221
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagctt 170  Q
    |||||||||||||||||  ||| |||||| ||||||||| || | ||||| |||| | ||||| |||||||||||||    
T  37076145 ttttgttcgatttgaaagaggcgggaccattttcgtgagctgatcaaaatgcgaggaccaaaaatgtaattaagctt 37076221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 49407892 - 49407797
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||| ||| ||||||  ||||||||| ||||||||  |||| ||||| ||||||||| || | ||||| |||| | |||||||||||||||||    
T  49407892 aaacataa-agtttagggacggttttgttctatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgtaattaagc 49407797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 330275 - 330381
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||| ||||| |||| || ||||||| |||||||||||| | ||||| |||| | |||| ||||    
T  330275 aaaactgcaaaaaacata-tagtttagggacgattttgtttgatttaaaaaaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaatgtgt 330373  T
Q  161 aattaagc 168  Q
    ||||||||    
T  330374 aattaagc 330381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 20840636 - 20840561
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||| |||| |||| ||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  20840636 gttttgttctattttaaaaaggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 20840561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 32535432 - 32535507
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  32535432 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 32535507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 50900966 - 50901072
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||  ||||||||||||||| ||  |||||| ||| ||| ||||| || | ||||| |||| | |||||||||    
T  50900966 aaaactgcaaaaaacata-tagtttagggacggttttgttcgatttgtaagaggcagggccatttttgtgagctggtcaaaatgcgaggaccaaaagtgt 50901064  T
Q  161 aattaagc 168  Q
    ||||||||    
T  50901065 aattaagc 50901072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 14654274 - 14654200
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||| |  ||||||| |||||||||||| | |||||   || |||||||||||||||||||    
T  14654274 ttttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtagtatcaaaagtgtaattaagc 14654200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 39556047 - 39556121
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  39556047 ttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 39556121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 40275168 - 40275094
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | |||||  ||| | |||||||||||||||||    
T  40275168 ttttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaagc 40275094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 46013497 - 46013423
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || | ||||| |||||||||||| | ||||| | || |||||||||||||||||||    
T  46013497 ttttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaagc 46013423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 52375802 - 52375876
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||| |||| |||  || ||||||| |||||||||||| | ||||| |||| | |||||||||||||||||    
T  52375802 ttttgttcaatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaagc 52375876  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 27199778 - 27199705
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||||||||  |||| ||||| ||||||||| || | ||||| |||| | ||||| |||||||||    
T  27199778 gttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaaatgtaattaa 27199705  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 37075760 - 37075687
Alignment:
Q  95 tttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| |||||||||  |||||||||| |||||||||||| | ||||| ||   | |||||||||||||||||    
T  37075760 tttgtttgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgcggagaccaaaagtgtaattaagc 37075687  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 49408251 - 49408332
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagcttatta 174  Q
    ||||||||||||||||||  | ||  |||| ||||||||| || | ||||| |||| | ||||||||||||||||| |||||    
T  49408251 gttttgttcgatttgaaagagacacaaccattttcgtgagatggtcaaaatgcgagtaccaaaagtgtaattaagcgtatta 49408332  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 52237288 - 52237361
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaag 167  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | |||||  ||| | ||||||||||||||||    
T  52237288 ttttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaag 52237361  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 22370671 - 22370599
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||| | ||| |||| || ||||||| |||||||||||| | ||||| |||| | |||||||||||||||    
T  22370671 ttttgtttggtttaaaaaaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 22370599  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 23644539 - 23644463
Alignment:
Q  92 tgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||  ||| |||| |||||||||| |||||||||| |   ||||| |||| | |||||||||||||||||    
T  23644539 tgttttgttctgttttaaaatggcaggaccaatttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagc 23644463  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 27200164 - 27200236
Alignment:
Q  96 ttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||||||||  ||||| |||| ||||||||| || | ||||| | || | |||||||||||||||||    
T  27200164 ttgttcgatttgaaagaggcagaaccattttcgtgagctggtcaaaatgcaaggaccaaaagtgtaattaagc 27200236  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 30104543 - 30104483
Alignment:
Q  108 aaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||||| |||||||||| | | ||||  |||| | |||||||||||||||||    
T  30104543 aaaagggcaggaccaatttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagc 30104483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 40838703 - 40838655
Alignment:
Q  118 gaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||| |||||||||||| | ||||| |||| |||||||||||||||||    
T  40838703 gaccattttcgtgagttggtcaaaatgcgaggatcaaaagtgtaattaa 40838655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 51473327 - 51473399
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    ||||||||||||| |||| |  ||||||| |||||||||||| | |||||   || |||||||||||||||||    
T  51473327 ttttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggatcaaaagtgtaattaa 51473399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 51828064 - 51827958
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggc-aggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtg 159  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| ||||| || ||||||| |||||||||||| | ||||| | || | ||||||||    
T  51828064 aaaaatgcaaaaaacata-tagtttagggacgattttgttcgattt-aaaagagctaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtg 51827967  T
Q  160 taattaagc 168  Q
    |||||||||    
T  51827966 taattaagc 51827958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 53509243 - 53509203
Alignment:
Q  171 attaaataacttaaacgacttcttgtataatttagcctata 211  Q
    ||||||||||||||| || |||| |||||||||||||||||    
T  53509243 attaaataacttaaaggagttctagtataatttagcctata 53509203  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 9930127 - 9930201
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||| |||| |||||||||||||||||||||||||| |   ||||| |||| | |||||||||||||||||    
T  9930127 ttttgttctattttaaaagggcaggaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagc 9930201  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 9928985 - 9928912
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaa 166  Q
    |||||||||  ||| |||||||||||||||||||||||||| | | ||||  |||| | |||||||||||||||    
T  9928985 gttttgttctgttttaaaagggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaattaa 9928912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 15255960 - 15255854
Alignment:
Q  61 aaaattgcaagaaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgt 160  Q
    |||| ||||| ||||||| |||| ||||||   ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||    
T  15255960 aaaactgcaaaaaacata-tagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgt 15255862  T
Q  161 aattaagc 168  Q
    ||||||||    
T  15255861 aattaagc 15255854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 41681210 - 41681135
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||||  ||| |||||||||||||||||||||||||| |   ||||  |||| | |||||||||||||||||    
T  41681210 gttttgttctgttttaaaagggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 41681135  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 4629873 - 4629835
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtga 131  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4629873 gttttgttctattttaaaagggcaggaccagtttcgtga 4629835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 7911087 - 7911161
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || || |||| |||||||||||| | ||||| |||| || ||||||||||||||||    
T  7911087 ttttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatgcgaggattaaaagtgtaattaagc 7911161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 16578183 - 16578109
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | |||| ||||| |||||||||||    
T  16578183 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaagaaccaaaaatgtaattaagc 16578109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 28254897 - 28254971
Alignment:
Q  94 ttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    ||||||||||||| |||  || ||||||| |||||||||||| | ||||| | || | |||||||||||||||||    
T  28254897 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaagc 28254971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 33742996 - 33742923
Alignment:
Q  95 tttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||||  ||| ||||||||| |||||||||||||||| | | ||||  |||| | |||||||||||||||||    
T  33742996 tttgttctgttttaaaagggcaagaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagc 33742923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 15547 - 15643
Alignment:
Q  72 aaacataatagtatagggattgttttgttcgatttgaaaagggcaggaccagtttcgtgagttgtttaaaattcgagaatcaaaagtgtaattaagc 168  Q
    |||||| ||||| ||||||  ||||||||||||||||||  | |||||||| ||||||||| || | ||||| |||||| ||||| | |||||||||    
T  15547 aaacatgatagtttagggacagttttgttcgatttgaaagagtcaggaccattttcgtgagctgatcaaaatgcgagaaccaaaaatctaattaagc 15643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 1210 - 1250
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  1210 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 1250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 4676 - 4716
Alignment:
Q  93 gttttgttcgatttgaaaagggcaggaccagtttcgtgagt 133  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  4676 gttttgttctgttttaaaagggcaggaccagtttcgtgagt 4716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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