View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_43 (Length: 249)
Name: NF3539_low_43
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40804085 - 40803844
Alignment:
| Q |
1 |
tggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcataattcaatcnnnnnnnnnaattggtcactactccatatgaattagtt |
100 |
Q |
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| T |
40804085 |
tggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcgtaattcaatctttttttttaattggtcactactccatatgaattagtt |
40803986 |
T |
|
| Q |
101 |
tctgcagaggacatgcattttttattgaaattctcaactctgtctcctgcatattcgctgattcagcttttatgtacatgcttgccctttctgttaagtt |
200 |
Q |
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| T |
40803985 |
tctgcagaggacatgcattttttattgaaattctcaacactgtctcctgcatattcgctgattcagctattatgtacatgcttgccctttctgttaagtt |
40803886 |
T |
|
| Q |
201 |
gtttattaatcctcagtttttatacagtttctatattctgtg |
242 |
Q |
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| T |
40803885 |
gtttattaatcctcagtttctatacagtttctatattctgtg |
40803844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 52517203 - 52517030
Alignment:
| Q |
72 |
aattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaatt---------------ctcaactctgtctcctgcatattc |
156 |
Q |
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| T |
52517203 |
aattggttactactcaatatgaactagtttctgcagatggcatgcattttttattgaaattttcatggttattttactcaactttgtctcctgcatcctc |
52517104 |
T |
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| Q |
157 |
gctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctc--agtttttatacagtttcta |
233 |
Q |
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| T |
52517103 |
cctgatt-agcttttatgtaca----agccctttctgttaagttgtttattaatcctcaaagtttctatacagtttcta |
52517030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 41031528 - 41031711
Alignment:
| Q |
72 |
aattggtcactactccatatgaattagtttctgcagagga--catgcattttttattgaaatt---------------ctcaactctgtctcctgcatat |
154 |
Q |
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||||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
41031528 |
aattggttactactcaatatgaactagtttctgcagaggattcatgcattttttattgaaattttcatggttcttttactcaactctgtctcctgcatct |
41031627 |
T |
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| Q |
155 |
tcgctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctc--agtttttatacagtttctatattctgt |
241 |
Q |
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| T |
41031628 |
tccctgattcagcttttatctaca----agccctttct-ttaagttgtttattaatcctcaaagtttctttacagtttctatattctgt |
41031711 |
T |
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