View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_44 (Length: 243)
Name: NF3539_low_44
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 42467053 - 42467276
Alignment:
| Q |
18 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
117 |
Q |
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| T |
42467053 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
42467152 |
T |
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| Q |
118 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggaataacctattccacacatgtcaattttcattgaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42467153 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggactaacctattccacacatgtcaattttcattgaag |
42467252 |
T |
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| Q |
218 |
tatgttgccatctgtgctcctcct |
241 |
Q |
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|||||||||||| |||||| |||| |
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| T |
42467253 |
tatgttgccatcagtgctcatcct |
42467276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 3183662 - 3183511
Alignment:
| Q |
18 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
117 |
Q |
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|||||||| |||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||| | ||| |
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| T |
3183662 |
aaaggaagcagaacaggatggattaagatgagccataactggggtgcttcctaccaagcatttgcaacactaggtggtcaagctctttctttcaggctta |
3183563 |
T |
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| Q |
118 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaa |
169 |
Q |
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|||| ||||| || || || ||||| || || |||||||||||||||||||| |
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| T |
3183562 |
cttcatacaccactaaggagactattattgcatggaatgttgctccttccaa |
3183511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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