View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_45 (Length: 240)
Name: NF3539_low_45
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3594643 - 3594864
Alignment:
| Q |
1 |
attattgaaaatgaattgtaagaacaaaattattggttaaatacgttctcaacagtggctcggtcgactttcccagtagttttagttttaccgatagaca |
100 |
Q |
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| T |
3594643 |
attattgaaaatgaattgtaagaagaaaatgattggttacgtacgttctcaacagtggctcggtcgactttcccagtagttttagttttaccgatagaca |
3594742 |
T |
|
| Q |
101 |
tatgcatcagacttccacgaatttctgttgtaacagtgttagacatggcaatatttgttcttccttcccactcctgtaacaacaaacaacaaattccaag |
200 |
Q |
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| T |
3594743 |
tatgcatcagacttccacgaatttctgtggtaacagtgttagacatgccaatatttgttcttccttcccactcctgtaacaacaaacaataaattccaag |
3594842 |
T |
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| Q |
201 |
tcacatttcaagaccatacaca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3594843 |
tcacatttcaagaccatacaca |
3594864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 28935025 - 28935164
Alignment:
| Q |
46 |
ttctcaacagtggctcggtcgactttcccagtagttttagttttaccgatagacatatgcatcagacttccacgaatttctgttgtaacagtgttagaca |
145 |
Q |
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||||||||||||||||||||| |||| || |||||||||||||||| || | ||| | ||| || |||||||||||||||||||||| ||||||||| |
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| T |
28935025 |
ttctcaacagtggctcggtcggctttgtcattagttttagttttaccaatggccatctctttcacacatccacgaatttctgttgtaacactgttagaca |
28935124 |
T |
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| Q |
146 |
tggcaatatttgttcttccttcccactcctgtaacaacaa |
185 |
Q |
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| T |
28935125 |
tggcaatattcattcttccttccaaatcctgcaacaacaa |
28935164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 8491067 - 8491229
Alignment:
| Q |
26 |
aaaattattggttaaatacgttctcaacagtggctcggtcgacttt-----cccagtagttttagttttaccgatagacatatgcatcagacttccacga |
120 |
Q |
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||||| |||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8491067 |
aaaatgattggttacatacgttctcaacagt---tcggtcgactttaatttcctagtagttttagttttaccgatagacatatgcatcagacttccacga |
8491163 |
T |
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| Q |
121 |
atttctgttgtaacagtgttagacatggcaatatttgttcttccttcccactcctgtaacaacaaa |
186 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8491164 |
atttctgtggtgacagtgttagacatggcaatatttgttcttccttcccactcctgcaacaacaaa |
8491229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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