View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_low_46 (Length: 238)

Name: NF3539_low_46
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_low_46
NF3539_low_46
[»] chr7 (10 HSPs)
chr7 (1-221)||(34721117-34721333)
chr7 (14-221)||(18929085-18929292)
chr7 (17-193)||(34715585-34715761)
chr7 (14-221)||(34735191-34735398)
chr7 (14-221)||(34727434-34727641)
chr7 (14-221)||(34730592-34730799)
chr7 (11-115)||(18924179-18924283)
chr7 (14-217)||(34717323-34717525)
chr7 (159-220)||(36215590-36215651)
chr7 (181-221)||(18924337-18924377)
[»] chr4 (19 HSPs)
chr4 (152-221)||(6624113-6624182)
chr4 (160-220)||(4126135-4126195)
chr4 (160-220)||(4322800-4322860)
chr4 (159-220)||(4333795-4333856)
chr4 (160-218)||(4343186-4343244)
chr4 (147-221)||(6794653-6794727)
chr4 (173-217)||(4135482-4135526)
chr4 (26-118)||(4322902-4322994)
chr4 (160-220)||(4351473-4351533)
chr4 (160-220)||(4358654-4358714)
chr4 (141-221)||(6751050-6751130)
chr4 (169-221)||(6756696-6756748)
chr4 (169-221)||(6814005-6814057)
chr4 (76-220)||(7888444-7888588)
chr4 (146-221)||(8413028-8413103)
chr4 (169-218)||(6834399-6834448)
chr4 (169-221)||(6547587-6547639)
chr4 (169-221)||(6714042-6714094)
chr4 (152-220)||(6726144-6726212)
[»] scaffold0373 (1 HSPs)
scaffold0373 (147-221)||(11576-11650)
[»] scaffold0294 (1 HSPs)
scaffold0294 (170-220)||(10366-10416)
[»] chr8 (1 HSPs)
chr8 (88-120)||(3313205-3313237)
[»] chr6 (1 HSPs)
chr6 (160-216)||(5075433-5075489)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34721333 - 34721117
Alignment:
Q  1 ccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||    
T  34721333 ccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagtcgtagat----ttgtcaaggaagtgtaata 34721238  T
Q  101 atcatcacaacaagagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaacttttta 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  34721237 atcatcacaacaagagatgttgatttacttcgcaggcttcaggtggatcatgtgtatacaatgaattcaatggatgagagtgaatctcttgaacttttta 34721138  T
Q  201 gttggtatgcattcaagcaac 221  Q
    |||||||||||||||||||||    
T  34721137 gttggtatgcattcaagcaac 34721117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 18929085 - 18929292
Alignment:
Q  14 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 113  Q
    |||||||||||||||||||||||||||  | |||| ||| |||||||||||  ||||     ||||||| || ||||||||  |||||||||||||||||    
T  18929085 tttcttgtgttggacgatgtgaataaagaggaccaattgaatgctttgtgcggaagtcacgaatggtttggtgaaggaagtagaataatcatcacaacaa 18929184  T
Q  114 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 213  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | |||||| || | |||||||||||| |||||||||||| |||||||    
T  18929185 gagatgatgatttacttagtaggcttaaagttcactatgtgtatagaatgaaagaaatggacgacaatgaatctcttgagctttttagttggcatgcatt 18929284  T
Q  214 caagcaac 221  Q
    ||||||||    
T  18929285 caagcaac 18929292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 34715761 - 34715585
Alignment:
Q  17 cttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaagag 116  Q
    |||||| | |||||||||||||||    |||| |||| |||||||||||||||  | | ||||||| ||||||||||| |||||||||||||||| ||||    
T  34715761 cttgtggttgacgatgtgaataaaaaagaccaattgggtgctttgtgcataagacgcaaatggtttggtcaaggaagtataataatcatcacaacgagag 34715662  T
Q  117 atgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaa 193  Q
    ||  |||||||||||   ||||||||||||| ||||| |||||| |||| |||||| |||| |||||||| ||||||    
T  34715661 atcatgatttacttcggtggcttcaggtggaccatgtatatacagtgaatgcaatgaatgacagtgaatcccttgaa 34715585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 34735398 - 34735191
Alignment:
Q  14 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 113  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||  ||||    |||||||| || ||||||||  |||||||||||||||||    
T  34735398 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaa 34735299  T
Q  114 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 213  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | ||||||    | |||||||||||| |||||||||||| |||||||    
T  34735298 gagatgatgatttacttggtaggcttaaagttcactatgtgtatagaatgaaagaaatggacagcaatgaatctcttgagctttttagttggcatgcatt 34735199  T
Q  214 caagcaac 221  Q
    ||| ||||    
T  34735198 caaacaac 34735191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 34727641 - 34727434
Alignment:
Q  14 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 113  Q
    ||||||||| | ||||||||||||||| || |||| ||| ||||||||||   ||||  |  ||||||| || ||||||||  |||||| ||||| ||||    
T  34727641 tttcttgtgcttgacgatgtgaataaagtggaccaattgaatgctttgtgtggaagtcatgaatggtttggtgaaggaagtagaataatgatcactacaa 34727542  T
Q  114 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 213  Q
    |||||| ||||||||||   |||||| | || ||  ||||||||| |||||| | ||||||||  | |||||||||||| |||||||||||| |||||||    
T  34727541 gagatgatgatttacttagtaggcttaaagttgactatgtgtatagaatgaaagaaatggatggcaatgaatctcttgagctttttagttggcatgcatt 34727442  T
Q  214 caagcaac 221  Q
    ||||||||    
T  34727441 caagcaac 34727434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 34730799 - 34730592
Alignment:
Q  14 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 113  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||  ||||    |||||||| || ||||||||  |||||||||||||||||    
T  34730799 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaa 34730700  T
Q  114 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 213  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | ||||||    | |||||||||||| ||||| |||||| ||| |||    
T  34730699 gagatgatgatttacttggtaggcttaaagttcactatgtgtatagaatgaaagaaatggacagcaatgaatctcttgagcttttcagttggcatgtatt 34730600  T
Q  214 caagcaac 221  Q
    ||||||||    
T  34730599 caagcaac 34730592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 18924179 - 18924283
Alignment:
Q  11 atgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaa 110  Q
    ||||| |||||| ||||| |||||||| ||| | | || ||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||    
T  18924179 atgttacttgtggtggacaatgtgaatgaacagcatcaattggatgctttgtgcataagttgcaaatggtttggtcaaggaagtataataatcatcacaa 18924278  T
Q  111 caaga 115  Q
    |||||    
T  18924279 caaga 18924283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 34717525 - 34717323
Alignment:
Q  14 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 113  Q
    ||||||||| |||||||||||||||||||| | |  ||| |||||||||| | ||||     ||||||| || |||||||   |||||||||||||||||    
T  34717525 tttcttgtgctggacgatgtgaataaactggagccattgaatgctttgtgaagaagtcagcaatggtttggttaaggaaggtgaataatcatcacaacaa 34717426  T
Q  114 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 213  Q
    |||||| |||| |||||   |||||| ||||||| ||||| |||| ||| || | ||||||  ||| ||||||||||||| |||| ||||||  ||||||    
T  34717425 gagatgatgatctactttgtaggcttaaggtgga-catgtatatagaatcaaagaaatggacaagaatgaatctcttgaagttttcagttggattgcatt 34717327  T
Q  214 caag 217  Q
    ||||    
T  34717326 caag 34717323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 36215651 - 36215590
Alignment:
Q  159 caatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    ||||||| | ||||||||| ||||||||  |||| |||||||||||| ||||||||||||||    
T  36215651 caatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaagcaa 36215590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 18924337 - 18924377
Alignment:
Q  181 tgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  18924337 tgaatctcttgagctttttagtttgtatgcattcaagcaac 18924377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 6624182 - 6624113
Alignment:
Q  152 gtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||||||||||  | | |||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  6624182 gtgtatacaattgaagaaatggatgagagtgaatctcttgagcttttcagttggcatgcattcaagcaac 6624113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 4126195 - 4126135
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  4126195 aatgaaagaaatggatgaaagtgaatctcttgaactttttagttggcatgctttcaagcaa 4126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 4322860 - 4322800
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||| | ||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  4322860 aatgaaagaaatggatgaaagtgaatctcttgagctttttagttggcatgcattcaagcaa 4322800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 4333795 - 4333856
Alignment:
Q  159 caatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    ||||||| | ||||||||| |||||||||||||| |||||||||| | ||||||||||||||    
T  4333795 caatgaaagaaatggatgaaagtgaatctcttgagctttttagtttgcatgcattcaagcaa 4333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 4343186 - 4343244
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagc 218  Q
    |||||| | ||||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  4343186 aatgaaagaaatggatggaagtgaatctcttgagctttttagttggcatgcattcaagc 4343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 6794653 - 6794727
Alignment:
Q  147 atcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||    
T  6794653 atcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaac 6794727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 4135526 - 4135482
Alignment:
Q  173 gatgagagtgaatctcttgaactttttagttggtatgcattcaag 217  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||    
T  4135526 gatgaaagtgaatctcttgagctttttagttggcatgcattcaag 4135482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 4322994 - 4322902
Alignment:
Q  26 gacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaagagat 118  Q
    |||||||||||||||||| ||||| |  ||||||||||   |||||||| |||||||  || ||| |||  ||||||||||||||| ||||||    
T  4322994 gacgatgtgaataaactggaccagctaaatgctttgtgtggaagttgtaaatggtttgctccaggtagtagaataatcatcacaactagagat 4322902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 4351473 - 4351533
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||| | |||| |||| |||||||||||||| | |||||||||| ||||||||||||||    
T  4351473 aatgaaagaaatgaatgaaagtgaatctcttgagcgttttagttggcatgcattcaagcaa 4351533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 4358654 - 4358714
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||| | ||||||||| |||||||||||||| |||||||||||| | || |||||||||    
T  4358654 aatgaaagaaatggatgaaagtgaatctcttgagctttttagttggcacgcgttcaagcaa 4358714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 6751050 - 6751130
Alignment:
Q  141 aggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||| ||||| |||||| |||| || | |||| | || |||||||||||||| ||||| |||||| |||||||||||||||    
T  6751050 aggttgatcaagtgtatgcaataaaagaaatgaacgaaagtgaatctcttgagcttttcagttggcatgcattcaagcaac 6751130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 6756696 - 6756748
Alignment:
Q  169 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    ||||||||| || ||||||||||| ||||| |||||| |||||||||||||||    
T  6756696 aatggatgaaagcgaatctcttgagcttttcagttggcatgcattcaagcaac 6756748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 6814005 - 6814057
Alignment:
Q  169 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||    
T  6814005 aatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaac 6814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 7888588 - 7888444
Alignment:
Q  76 atggttttgtcaaggaagtgtaataatcatcacaacaagagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggat 175  Q
    ||||||| || | ||||||  |||| ||||||||||||| |||| |||||||||    |||||| | || || ||||| || | |||||| | |||||||    
T  7888588 atggtttggtaagggaagtagaatactcatcacaacaagggatgatgatttactcagtaggcttgaagtcgaccatgtatacagaatgaaggaaatggat 7888489  T
Q  176 gagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
       ||||||||||| || ||||||| |||| ||||||||||||||    
T  7888488 agcagtgaatctctagagctttttaattggcatgcattcaagcaa 7888444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 8413028 - 8413103
Alignment:
Q  146 gatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    ||||| ||||||||||| || | |||||| || |||||||||||  | ||||| |||||| |||||||||||||||    
T  8413028 gatcaagtgtatacaataaaagaaatggacgaaagtgaatctctcaagcttttcagttggcatgcattcaagcaac 8413103  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 6834399 - 6834448
Alignment:
Q  169 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagc 218  Q
    |||||| || |||||||||||||| ||||| |||||| ||||||||||||    
T  6834399 aatggacgaaagtgaatctcttgagcttttcagttggcatgcattcaagc 6834448  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 6547639 - 6547587
Alignment:
Q  169 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    ||||||||| | |||||||||||| || || |||||| |||||||||||||||    
T  6547639 aatggatgaaattgaatctcttgagctattcagttggcatgcattcaagcaac 6547587  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 6714042 - 6714094
Alignment:
Q  169 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||||||||||| ||||||||||| |||||| | ||| ||||||| |||||||    
T  6714042 aatggatgagagggaatctcttgagcttttttgctggcatgcatttaagcaac 6714094  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 6726144 - 6726212
Alignment:
Q  152 gtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||||||||  | | ||||||||| |||||||||||  | ||||| |||||| ||||||||||||||    
T  6726144 gtgtatacaatagaagaaatggatgaaagtgaatctctcaagcttttcagttggcatgcattcaagcaa 6726212  T

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Target: scaffold0373 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 11650 - 11576
Alignment:
Q  147 atcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaac 221  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||    
T  11650 atcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaac 11576  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 10416 - 10366
Alignment:
Q  170 atggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 220  Q
    |||||||| ||||||||  |||| |||||||||||| ||||||||||||||    
T  10416 atggatgatagtgaatcaattgagctttttagttggcatgcattcaagcaa 10366  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 3313205 - 3313237
Alignment:
Q  88 aggaagtgtaataatcatcacaacaagagatgt 120  Q
    ||||||| |||||||||||||||||||||||||    
T  3313205 aggaagtataataatcatcacaacaagagatgt 3313237  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 5075489 - 5075433
Alignment:
Q  160 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaa 216  Q
    |||||| | ||||||||| ||||||||  |||| |||||||||||| ||||||||||    
T  5075489 aatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaa 5075433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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