View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_47 (Length: 238)
Name: NF3539_low_47
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 52234936 - 52234776
Alignment:
| Q |
1 |
ctataagaacattagaaccctaattcccaaatttaggatgcactcaaatcctcttcaatttcttccatattttccttcttccatcctcgttattgaagaa |
100 |
Q |
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| T |
52234936 |
ctataagaacgttagaatcctaattcccaaatttaggatgcactcaaatcctcttcaatttcttccatattttccttctttcatcctcgttattgaagaa |
52234837 |
T |
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| Q |
101 |
attaaaaaggcttcaaagttcaaacacat--gatatttcattagggattgaagaaattgagaaggctt |
166 |
Q |
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| T |
52234836 |
attaaaaaggctt-------caaacacatgagatatttcattagggattgaagaaattgagaaggctt |
52234776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 52234749 - 52234701
Alignment:
| Q |
174 |
ttatttcttctgtatcgaagaaattgagaaagctttgaatatgaatggt |
222 |
Q |
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| T |
52234749 |
ttatttcttctgtatcgaagaaattgagaaagctttgaatatgaatggt |
52234701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 12220470 - 12220314
Alignment:
| Q |
1 |
ctataagaacattagaaccctaattcccaaatttaggatgcactcaaatcctcttcaatttcttccatattttccttcttccatcctcgttattgaagaa |
100 |
Q |
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| T |
12220470 |
ctataagaacattagaaccctaattcccaaatttagaataaactcaaatcctcttcaatttcttccatattttccttcttccatcctcgttattgaagaa |
12220371 |
T |
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| Q |
101 |
attaaaaaggcttcaaagttcaaacacatgatatttcattagggattgaagaaattgagaag |
162 |
Q |
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| T |
12220370 |
attaaaaaggcttcaa-----acacataagatatttcattagggattgaagaaattgagaag |
12220314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 18535124 - 18535051
Alignment:
| Q |
18 |
ccctaattcccaaatttaggatgcactcaaatcctcttcaatttcttccatattttccttcttccatcctcgtt |
91 |
Q |
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|||||||||| |||||| ||| ||||||||||||| ||||||| ||||| | |||||||||||||||||||||| |
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| T |
18535124 |
ccctaattccaaaatttgggaggcactcaaatcctattcaattccttccgtcttttccttcttccatcctcgtt |
18535051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 40489818 - 40489869
Alignment:
| Q |
40 |
gcactcaaatcctcttcaatttcttccatattttccttcttccatcctcgtt |
91 |
Q |
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| T |
40489818 |
gcactcaaatcctattcaattccttccatcttttccttcttccatcctcgtt |
40489869 |
T |
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