View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_low_48 (Length: 238)

Name: NF3539_low_48
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_low_48
NF3539_low_48
[»] chr6 (2 HSPs)
chr6 (1-231)||(31239966-31240196)
chr6 (1-32)||(31230908-31230939)
[»] chr3 (9 HSPs)
chr3 (163-231)||(36279028-36279096)
chr3 (163-231)||(36280296-36280364)
chr3 (167-224)||(45600925-45600982)
chr3 (163-224)||(47118037-47118098)
chr3 (167-231)||(20464149-20464213)
chr3 (163-229)||(2591703-2591769)
chr3 (163-224)||(49261523-49261584)
chr3 (170-231)||(52317062-52317123)
chr3 (167-231)||(55388153-55388217)
[»] chr2 (8 HSPs)
chr2 (163-231)||(17330209-17330277)
chr2 (163-231)||(17466807-17466875)
chr2 (163-231)||(7073715-7073783)
chr2 (163-228)||(31090240-31090305)
chr2 (163-231)||(2910176-2910244)
chr2 (164-231)||(17466118-17466185)
chr2 (168-231)||(31814323-31814386)
chr2 (167-231)||(31091506-31091570)
[»] chr7 (13 HSPs)
chr7 (163-231)||(10899052-10899120)
chr7 (163-231)||(7258351-7258419)
chr7 (168-231)||(45584475-45584538)
chr7 (167-231)||(7259663-7259727)
chr7 (167-231)||(12223678-12223742)
chr7 (167-231)||(13578300-13578363)
chr7 (167-231)||(42477460-42477524)
chr7 (169-231)||(5930112-5930174)
chr7 (166-224)||(8375569-8375627)
chr7 (169-231)||(43457539-43457601)
chr7 (179-231)||(33060902-33060954)
chr7 (167-231)||(35729065-35729129)
chr7 (163-231)||(48788651-48788719)
[»] chr1 (10 HSPs)
chr1 (163-231)||(6613957-6614026)
chr1 (171-231)||(52439559-52439619)
chr1 (169-231)||(9339728-9339790)
chr1 (163-231)||(6612495-6612563)
chr1 (163-231)||(22856756-22856824)
chr1 (170-229)||(10333069-10333128)
chr1 (168-231)||(22857558-22857621)
chr1 (163-231)||(7945533-7945601)
chr1 (163-231)||(10333165-10333233)
chr1 (163-231)||(32665749-32665817)
[»] chr8 (6 HSPs)
chr8 (163-231)||(5965421-5965489)
chr8 (167-231)||(32898424-32898488)
chr8 (167-231)||(35177475-35177539)
chr8 (163-231)||(1952949-1953017)
chr8 (174-231)||(28524845-28524902)
chr8 (167-231)||(35178784-35178847)
[»] chr5 (6 HSPs)
chr5 (167-231)||(4592941-4593005)
chr5 (168-229)||(546017-546078)
chr5 (163-231)||(9538028-9538096)
chr5 (163-231)||(14891126-14891194)
chr5 (163-231)||(19186199-19186267)
chr5 (167-231)||(32641705-32641769)
[»] chr4 (7 HSPs)
chr4 (163-231)||(19050314-19050382)
chr4 (169-231)||(39869002-39869064)
chr4 (166-231)||(50694828-50694893)
chr4 (167-231)||(42278129-42278193)
chr4 (170-224)||(48740006-48740060)
chr4 (167-224)||(53771035-53771092)
chr4 (169-229)||(4701847-4701907)
[»] scaffold0039 (1 HSPs)
scaffold0039 (163-231)||(79662-79730)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31240196 - 31239966
Alignment:
Q  1 attaatgtatttatgatcatgaaacaatattatgtctagtagctagtaatacatattcttctatactatactatataaagaaaagagtaaattgttattt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31240196 attaatgtatttatgatcatgaaacaatattttgtctagtagctagtaatacatattcttctatactatactatataaagaaaagagtaaattgttattt 31240097  T
Q  101 agtacctgattcagcatctcgtagttataaaagtctctaacttaagattaaatatnnnnnnngtctctgactctgcatttccgttatcattttcgtccca 200  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  31240096 agtacctgattcagcatctcgtagtcataaaagtctttaacttaagattaaatataaaaaaagtctctgactctgcatttccgttatcattttcgtccca 31239997  T
Q  201 gacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  31239996 gacgttaaatgattctgttaagtgatgatgt 31239966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31230939 - 31230908
Alignment:
Q  1 attaatgtatttatgatcatgaaacaatatta 32  Q
    ||||||||||||||||||||||||||||||||    
T  31230939 attaatgtatttatgatcatgaaacaatatta 31230908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 36279028 - 36279096
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||||  ||||| ||||||||||||||    
T  36279028 gtctctgactctgcacttccgttatcattttagtccctgacgttaaaaaattcttttaagtgatgatgt 36279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 36280364 - 36280296
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||| ||| ||||| |||||||||  | | ||||||||||||||||    
T  36280364 gtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatatgttaagtgatgatgt 36280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 45600982 - 45600925
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||| |||||||||||||    
T  45600982 ctgactctgcacttccgttatcactttagtccacgacgttaaataattctgttaagtg 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 47118098 - 47118037
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    ||||||||||||||| || |||||||| ||| ||||| |||||||||| ||| |||||||||    
T  47118098 gtctctgactctgcactttcgttatcactttagtccctgacgttaaataattttgttaagtg 47118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 20464149 - 20464213
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||| ||||||| ||| ||||  |||||||||| | ||||||||||||||||||    
T  20464149 ctgactctgcacttctgttatcactttagtccacgacgttaaataactctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 2591703 - 2591769
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgat 229  Q
    ||||||||||||||| |||| | |||| ||| ||||| || ||||| | ||||||||||||||||||    
T  2591703 gtctctgactctgcacttccatgatcactttagtccctgatgttaagttattctgttaagtgatgat 2591769  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 49261584 - 49261523
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    |||||| |||||||||||||||||||| ||| ||| | |||||||| | ||||| |||||||    
T  49261584 gtctctaactctgcatttccgttatcactttagtctctgacgttaatttattctattaagtg 49261523  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 52317062 - 52317123
Alignment:
Q  170 actctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||  |||||||||||||| ||||  |||||||||  | ||||||||||||||||||    
T  52317062 actctgcacctccgttatcattttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 55388153 - 55388217
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| | ||||||||| ||| ||||| |||||||||  | | ||||||||||||||||    
T  55388153 ctgactctgcactcccgttatcactttagtccctgacgttaaaaaaatttgttaagtgatgatgt 55388217  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 17330277 - 17330209
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||||||||||||||| ||| ||||  |||||||| | ||||||||||||||||||||    
T  17330277 gtctctgactctgcatttccgttatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 17466875 - 17466807
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||| ||| |||  ||||||||||| ||||||||||||||||||||    
T  17466875 gtctctgactctgcacttccgttatcactttagtctaagacgttaaataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 7073715 - 7073783
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||| |||||| ||||||||||| ||| ||||| |||||||| | ||||||||||||||||||||    
T  7073715 gtctctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 31090240 - 31090305
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatga 228  Q
    ||||||||||||||| ||||||||| ||||| ||||| |||||||||  | | |||||||||||||    
T  31090240 gtctctgactctgcacttccgttatgattttagtccctgacgttaaaaaaatatgttaagtgatga 31090305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 2910176 - 2910244
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| |||| || ||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  2910176 gtctctgactctgcacttcctttgtcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 17466118 - 17466185
Alignment:
Q  164 tctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||||||| ||||||| ||| ||| ||||| ||||| |||  ||| ||||||||||||||||    
T  17466118 tctctgactctgcacttccgttttcactttagtccctgacgtgaaacaattatgttaagtgatgatgt 17466185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 31814386 - 31814323
Alignment:
Q  168 tgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||| ||||||||||| ||| |||||   | |||||| ||||||||||||||||||||    
T  31814386 tgactctgcacttccgttatcactttagtccctagcattaaataattctgttaagtgatgatgt 31814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 31091570 - 31091506
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| ||| ||| | |||||||||  | | ||||||||||||||||    
T  31091570 ctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatatgttaagtgatgatgt 31091506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 10899120 - 10899052
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  10899120 gtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 7258351 - 7258419
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||| ||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  7258351 gtctctgactctgcacttctgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 45584538 - 45584475
Alignment:
Q  168 tgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  45584538 tgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 7259727 - 7259663
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||| || ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  7259727 ctgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 12223742 - 12223678
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||| | ||| ||| | || ||||||| ||||||||||||||||||||    
T  12223742 ctgactctgcagttccgttattactttagtcactgatgttaaataattctgttaagtgatgatgt 12223678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 13578363 - 13578300
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||| ||| ||||||||||||||||    
T  13578363 ctgactctgcacttccgttatcactttagtcct-gacgttaaataattatgttaagtgatgatgt 13578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 42477460 - 42477524
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| |||||||||||||||  |||| |||||||||  | | ||||||||||||||||    
T  42477460 ctgactctgcacttccgttatcattttaatccctgacgttaaaaaaatatgttaagtgatgatgt 42477524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 5930174 - 5930112
Alignment:
Q  169 gactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| |||| ||||||||||| ||| ||||| | | |||||| ||||||||||||||||||||    
T  5930174 gactgtgcacttccgttatcactttagtccctgccattaaataattctgttaagtgatgatgt 5930112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 8375627 - 8375569
Alignment:
Q  166 tctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    |||||||||||| ||||||||||| ||| ||||  |||||||||| ||| |||||||||    
T  8375627 tctgactctgcacttccgttatcaatttagtccgcgacgttaaataattttgttaagtg 8375569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 43457539 - 43457601
Alignment:
Q  169 gactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||| ||||||||||| ||| || |  |||||||| | ||||||||||||||||||||    
T  43457539 gactctgcacttccgttatcactttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 33060902 - 33060954
Alignment:
Q  179 ttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||| ||| | |||||||||| |||||||||| |||||||||    
T  33060902 ttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgt 33060954  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 35729129 - 35729065
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||| ||||| | | ||||| ||| |||||| | ||||||||||||||||||    
T  35729129 ctgactctgcacttccgctatcactgtagtccctgacattaaataaatctgttaagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 48788719 - 48788651
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||| ||| ||| | |||||||||  | | ||||| ||||||||||    
T  48788719 gtctctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaggtgatgatgt 48788651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 6614026 - 6613957
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcc-cagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||| ||||||||||| |||| | |||||||||| ||| ||||||||||||||||    
T  6614026 gtctctgactctgcacttcagttatcattttagtcctccgacgttaaataattttgttaagtgatgatgt 6613957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 52439559 - 52439619
Alignment:
Q  171 ctctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  52439559 ctctgcatttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 9339728 - 9339790
Alignment:
Q  169 gactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  9339728 gactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 6612495 - 6612563
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| |||| |||||| |||  |||| |||||||||| ||| ||||||||||| ||||    
T  6612495 gtctctgactctgcacttccattatcactttaatccctgacgttaaataattttgttaagtgattatgt 6612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 22856756 - 22856824
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||| |||||||| ||||||||||| ||| ||| | |||||||||| ||| ||||||||||| ||||    
T  22856756 gtctctaactctgcacttccgttatcactttagtctccgacgttaaataattatgttaagtgattatgt 22856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 10333069 - 10333128
Alignment:
Q  170 actctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgat 229  Q
    |||||||| ||||||||||||||| ||||  |||||||||  | ||||||||||||||||    
T  10333069 actctgcacttccgttatcattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 22857621 - 22857558
Alignment:
Q  168 tgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||| |||| ||||||||||| ||| ||||  |||||||||| ||| ||||||||||||||||    
T  22857621 tgactttgcacttccgttatcactttagtccatgacgttaaataattatgttaagtgatgatgt 22857558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 7945601 - 7945533
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||| |||| ||||||||||| ||| ||||| |||||||||  | | || |||||||||||||    
T  7945601 gtctctgactatgcacttccgttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgt 7945533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 10333233 - 10333165
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||||||| ||||||||||| ||| ||| |   |||||||  | ||||||||||||||||||    
T  10333233 gtctctgactctgcacttccgttatcactttagtctctagcgttaaaaaaatctgttaagtgatgatgt 10333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 32665817 - 32665749
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| |||||||||| ||||||||||| ||| ||||| | ||||| |  | ||||||||||||||||||    
T  32665817 gtctttgactctgcacttccgttatcactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 5965489 - 5965421
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| |||||||||| ||||||||||| ||| ||| | |||||||||||||| |||||||| |||||||    
T  5965489 gtctttgactctgcacttccgttatcactttagtctctgacgttaaatgattatgttaagtaatgatgt 5965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 32898488 - 32898424
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  32898488 ctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 35177475 - 35177539
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  35177475 ctgactctgcacttccgttatcactttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 1953017 - 1952949
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| |||||||| | ||||||||||| ||| ||| | |||||||||| | ||||||||||||||||||    
T  1953017 gtctatgactctgtacttccgttatcactttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 28524845 - 28524902
Alignment:
Q  174 tgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| ||||||||||||||| ||| | |||||||||| ||| |||||| |||||||||    
T  28524845 tgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgt 28524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 35178847 - 35178784
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| |||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  35178847 ctgattctgcacttccgttatcactttagtccctgacgttaaa-aaatctgttaagtgatgatgt 35178784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 4592941 - 4593005
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||||  | ||||||||||||||||||    
T  4592941 ctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 546078 - 546017
Alignment:
Q  168 tgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgat 229  Q
    |||||||||| ||||||||||| ||| ||||| |||||||||  | | ||||||||||||||    
T  546078 tgactctgcacttccgttatcactttagtccctgacgttaaaaaaatttgttaagtgatgat 546017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 9538096 - 9538028
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||| | |||| ||||||||||||||| ||| | || ||||||| ||| ||||||||||| ||||    
T  9538096 gtctctgattgtgcacttccgttatcattttagtctctgatgttaaataattatgttaagtgattatgt 9538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 14891194 - 14891126
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||||| || ||||||||||| ||| ||| | |||||||||  | | ||||||||||||||||    
T  14891194 gtctctgactctacacttccgttatcactttagtctctgacgttaaaaaaatatgttaagtgatgatgt 14891126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 19186267 - 19186199
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||||||||||| |||||||||||||| ||| ||||  | |||||||  | ||||||||| ||||||||    
T  19186267 gtctctgactctacatttccgttatcactttagtccttgtcgttaaaacaatctgttaagcgatgatgt 19186199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 32641769 - 32641705
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| |||  |||| |||||||||  | | ||||||||||||||||    
T  32641769 ctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatatgttaagtgatgatgt 32641705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 19050314 - 19050382
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||| ||||||||| ||||||||||| ||| ||| | |||||||||| ||||| ||||||||||||||    
T  19050314 gtctcggactctgcacttccgttatcactttagtctccgacgttaaataattctattaagtgatgatgt 19050382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 39869002 - 39869064
Alignment:
Q  169 gactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||| ||||||||||| ||| ||| | |||||||||| ||| ||||||||||||||||    
T  39869002 gactctgcacttccgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 39869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 50694828 - 50694893
Alignment:
Q  166 tctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||| |||||| ||||||||||  ||| ||||| |||||||||  ||||||||||||||||||||    
T  50694828 tctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 42278129 - 42278193
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    ||||||||||| ||||||||||| |||  |||| |||||||||  | ||||||||||||||||||    
T  42278129 ctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 48740060 - 48740006
Alignment:
Q  170 actctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    |||||||| ||| ||||||| ||| ||||| |||||||||| |||||||||||||    
T  48740060 actctgcacttctgttatcactttagtccctgacgttaaataattctgttaagtg 48740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 53771092 - 53771035
Alignment:
Q  167 ctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtg 224  Q
    ||||||||||| ||||||||||| ||| |||   |||||||||| |||||||||||||    
T  53771092 ctgactctgcacttccgttatcactttagtcattgacgttaaataattctgttaagtg 53771035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 4701847 - 4701907
Alignment:
Q  169 gactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgat 229  Q
    |||| |||| ||||| ||||| ||| ||||| || ||||||| ||||||||||||||||||    
T  4701847 gactatgcacttccgctatcactttagtccctgatgttaaataattctgttaagtgatgat 4701907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 79730 - 79662
Alignment:
Q  163 gtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 231  Q
    |||| ||||||||||||||  |||||||||| |||   |||||||||| ||| | ||||||||||||||    
T  79730 gtctttgactctgcatttctattatcattttagtctttgacgttaaataattttattaagtgatgatgt 79662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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