View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_5 (Length: 518)
Name: NF3539_low_5
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 271 - 508
Target Start/End: Complemental strand, 3646868 - 3646633
Alignment:
| Q |
271 |
gttccttccatcacagatacctcaatatcgctgtctttgcagccgttcaagcaacagtaaggaatcaaaacatgttatttgttgctactagttttgcttc |
370 |
Q |
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| T |
3646868 |
gttccttccatcacagatacctcaatatcgctgtctttgcagccgttcaagcaacagtaaggaatcaaaacatgttatttgttgctactagttttgcttt |
3646769 |
T |
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| Q |
371 |
tacacccaatttaataatcaacatttcattttcatctaaatatgctttatccaccaggatcgccgcaacttgctataaatttattattatctatatattt |
470 |
Q |
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| T |
3646768 |
tacacccaatttaataatcaacatttcattttcatctaaatatgctttatccaccaggatcgccgcaacttgctataaatttattattatctttata--t |
3646671 |
T |
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| Q |
471 |
ttgtgcgatattgttaaggtttattgtctgcccctttg |
508 |
Q |
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| T |
3646670 |
ttgttcgatattgttaaggtttatcgtctgcccctttg |
3646633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 3647124 - 3646919
Alignment:
| Q |
20 |
gacaacactaggcataaccgtgaatttggtcacatatttaacaggtacaatgcatttgggtaacgctgcctctgccaacatagttacaaattttgttgga |
119 |
Q |
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| T |
3647124 |
gacaacactaggcataaccgtgaatttggtcacatatttaacaggtacaatgcatttgggtaacgcttcctctgccaacatagttacaaattttgttgga |
3647025 |
T |
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| Q |
120 |
acttcatttatgctttgtttgttcggtggctttctaggcgacacttacattggaaggttagtataccag-ttaattattgtgtgcatgtttgtcagaatc |
218 |
Q |
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| T |
3647024 |
acttcatttatgctttgtttgttcggtggctttctaggcgacacttacattggaaggttcgtatactagtttaattattgtgtgcatgtttgtcagaatc |
3646925 |
T |
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| Q |
219 |
aatcaa |
224 |
Q |
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|||||| |
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| T |
3646924 |
aatcaa |
3646919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 3659510 - 3659433
Alignment:
| Q |
20 |
gacaacactaggcataaccgtgaatttggtcacatatttaacaggtacaatgcatttgggtaacgctgcctctgccaa |
97 |
Q |
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| T |
3659510 |
gacaacactcggcatcgccgttaatttggtcacatacttgaccggtactatgcatttgggcaatgctgcctctgccaa |
3659433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 41872036 - 41872193
Alignment:
| Q |
21 |
acaacactaggcataaccgtgaatttggtcacatatttaacaggtacaatgcatttgggtaacgctgcctctgccaacatagttacaaattttgttggaa |
120 |
Q |
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| T |
41872036 |
acaacaatgggcatagctgtaaatttggtgacatatttgactggaactatgcatttaggaaatgcttcctctgctaacatagtcaccaacttcatgggaa |
41872135 |
T |
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| Q |
121 |
cttcatttatgctttgtttgttcggtggctttctaggcgacacttacattggaaggtt |
178 |
Q |
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| T |
41872136 |
catgttttatgctttgtttgcttggtggttttgtagccgacacttttattggaaggtt |
41872193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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