View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_51 (Length: 237)
Name: NF3539_low_51
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_51 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 22918537 - 22918728
Alignment:
| Q |
48 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaa--aatacattaatatat |
145 |
Q |
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| T |
22918537 |
atattaagagtgtaagtttaaaaagatatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaaaaaatacattaatatat |
22918636 |
T |
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| Q |
146 |
aggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatatttttgtttct |
237 |
Q |
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| T |
22918637 |
aggtgataggaataagttatagttatctcatataaagtgtgtcttcatgggaaaaatattaaacaaactgatgatgatatatttttgtttct |
22918728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 22918295 - 22918332
Alignment:
| Q |
4 |
ttttgagttcatgaagaaatgtagaacctgttatgaat |
41 |
Q |
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| T |
22918295 |
ttttgagttcatgaagaaatgtagaacctgttatgaat |
22918332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 3522766 - 3522858
Alignment:
| Q |
139 |
aatatataggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatattttt |
231 |
Q |
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| T |
3522766 |
aatatataggtgtgaggaataagttatagttatcttatataaagtgtgtcttcatgggaaacatattaaacaaactgatgatgatattttttt |
3522858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 43787478 - 43787533
Alignment:
| Q |
48 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
103 |
Q |
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| T |
43787478 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
43787533 |
T |
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