View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_low_55 (Length: 223)

Name: NF3539_low_55
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_low_55
NF3539_low_55
[»] chr8 (2 HSPs)
chr8 (124-204)||(1431072-1431152)
chr8 (1-62)||(1431216-1431277)
[»] chr5 (6 HSPs)
chr5 (127-202)||(15388844-15388919)
chr5 (127-203)||(5249813-5249889)
chr5 (134-203)||(13611380-13611449)
chr5 (5-59)||(15388967-15389023)
chr5 (134-203)||(33642861-33642930)
chr5 (127-203)||(5812942-5813018)
[»] chr7 (1 HSPs)
chr7 (131-194)||(20437548-20437611)
[»] chr2 (1 HSPs)
chr2 (133-195)||(33470679-33470741)
[»] chr4 (1 HSPs)
chr4 (134-203)||(54132527-54132596)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 1431152 - 1431072
Alignment:
Q  124 cctattagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaatg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  1431152 cctattaggtgtgaatcttcattcctaactttaaaaactccatcataagatgtgaatttggatacataaaaagtaacaatg 1431072  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1431277 - 1431216
Alignment:
Q  1 cttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaactataacaaatcct 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1431277 cttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaactataacaaatcct 1431216  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 15388919 - 15388844
Alignment:
Q  127 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaa 202  Q
    ||||| ||||||||||||||| |||||| ||||| | |||||||  ||||||| |||||||||||||||| |||||    
T  15388919 attaggtgtgaatcttcattcttaacttcaaaaatttcatcatatgatgtgaacttgaatacataaaaaggaacaa 15388844  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 5249889 - 5249813
Alignment:
Q  127 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 203  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||  |||| || |||||| ||||||||| ||||||    
T  5249889 attaggtgtgaatcttcattcttaactttaaaaatttcatcatatgatgtaaagttgaatgcataaaaaggaacaat 5249813  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 13611380 - 13611449
Alignment:
Q  134 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 203  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  13611380 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 13611449  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 15389023 - 15388967
Alignment:
Q  5 aaaataatatgaaaggtgaagttgttatccaatgcaataaa--aaactataacaaat 59  Q
    |||| ||| ||||||||||||||  ||||||||||||||||  ||||||||||||||    
T  15389023 aaaaaaatgtgaaaggtgaagttaatatccaatgcaataaaagaaactataacaaat 15388967  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 33642861 - 33642930
Alignment:
Q  134 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 203  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  33642861 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 33642930  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 5813018 - 5812942
Alignment:
Q  127 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 203  Q
    ||||| ||||||||||||||| ||||||||| || |  ||||||  |||| || |||||| ||||||||| ||||||    
T  5813018 attaggtgtgaatcttcattcttaactttaataattttatcatatgatgtaaacttgaatgcataaaaaggaacaat 5812942  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 20437611 - 20437548
Alignment:
Q  131 gatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaa 194  Q
    ||||||||||||||||| |||||||||||| | |||||||  |||||||||  ||| |||||||    
T  20437611 gatgtgaatcttcattcttaactttaaaaatttcatcatatgatgtgaattgaaatgcataaaa 20437548  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 33470679 - 33470741
Alignment:
Q  133 tgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaa 195  Q
    ||||||||||||||| |||||||||||  | |||||||  ||||||| |||||| ||||||||    
T  33470679 tgtgaatcttcattcttaactttaaaattttcatcatatgatgtgaacttgaatgcataaaaa 33470741  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 54132527 - 54132596
Alignment:
Q  134 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 203  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  54132527 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 54132596  T

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