View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_7 (Length: 467)
Name: NF3539_low_7
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 46549793 - 46549342
Alignment:
| Q |
1 |
aaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46549793 |
aaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgagtttgtgatacctgaggcagttgaaaaat |
46549694 |
T |
|
| Q |
101 |
gtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46549693 |
gtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacgccgtatcttgaatcgaaacatctggaccatttggtaagaattctggttt |
46549594 |
T |
|
| Q |
201 |
gattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549593 |
gattgtgtataacattctccatagagaagacagccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatat |
46549494 |
T |
|
| Q |
301 |
ctacatttcaatattaaagaagaagaaagtattaaagcttgcacagcaagctatcactagagtctctactaacactatagtctctaaactacatacaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549493 |
ctacatttcaatattaaagaagaagaaagtattaaagcttgcacggcaagctatcactagagtctctactaacactatagtctctaaactacatacaatt |
46549394 |
T |
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| Q |
401 |
caataaagagtaatcaaactatgtatattctaacagtaacaatgtatataat |
452 |
Q |
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| T |
46549393 |
caataaagagtaatcaaactatgtatattctaacagtaacaatgtatataat |
46549342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 1026349 - 1025900
Alignment:
| Q |
1 |
aaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| | ||| |||| |||||||||||||||||||||||||||| |
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| T |
1026349 |
aaatagattgtctgagattaggtcacaataacagctaatggaatattgcaagccaaccaagaatttaccgagtttgtgatacctgaggcagttgaaaaat |
1026250 |
T |
|
| Q |
101 |
gtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggttt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1026249 |
gtgactcgatattgtgatatgtaatttggactttaggttggtcaatcaacactgtatcttgaatcgaaacatctggaccatttggtaagaattctggttt |
1026150 |
T |
|
| Q |
201 |
gattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatat |
300 |
Q |
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||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1026149 |
gatcgtgtttaaaattctccatagagaagacatccagggatcaagagtaccttcatagctacaaataattataccatcattagtcacttaaataaaatat |
1026050 |
T |
|
| Q |
301 |
ctacatttcaatattaaagaagaagaaagtattaaagcttgcacagcaagctatcactagagtctctactaacactatagtctctaaactacatacaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1026049 |
ctacatttcaatattaaagaagaagaaattattaaagcttgcacagcaagctatcactagagtctctactaacac--tagtctctaaactacatataatt |
1025952 |
T |
|
| Q |
401 |
caataaagagtaatcaaactatgtatattctaacagtaacaatgtatataat |
452 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1025951 |
caatacagagtaatcaaactatgtatattcaaacagtaacaatgtatataat |
1025900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 40827981 - 40827760
Alignment:
| Q |
106 |
tcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattg |
205 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||| |
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| T |
40827981 |
tcaatattgtgatatgtgatttggactttaggttggtcaatcaacgttgtatcttgaatcaaaacatctggaccactaggtaagagttctggtttgatca |
40827882 |
T |
|
| Q |
206 |
tgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatatctaca |
305 |
Q |
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||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| |||||||||| |||||| |||||||||||| |||| | |
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| T |
40827881 |
tgtttaacattctccatagagaagacagccaaggatcaagagtaccttcatagctgcaaatagttataccatctttagtcccttaaataaaatctctata |
40827782 |
T |
|
| Q |
306 |
tttcaatattaaagaagaagaa |
327 |
Q |
| |
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| |||||| |||||||||||| |
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| T |
40827781 |
atccaatatcaaagaagaagaa |
40827760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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