View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_8 (Length: 448)
Name: NF3539_low_8
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 6881449 - 6881148
Alignment:
| Q |
18 |
ataatctcttttactcaagaatactatggagaattctctgtggcagcnnnnnnnnnnnnnnnntcatttc-acaattgcaatgactgaattgacaatgag |
116 |
Q |
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| T |
6881449 |
ataatctcttttactcaagaatactatggagaattctctgtggcagcaaaataaaaataaaaatcatttccacaattgcaatgactgaattgacaatgag |
6881350 |
T |
|
| Q |
117 |
aacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaattgtaaatgtgcctccatcgttaagagaactaggaaatatctctgtcctggtactc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
6881349 |
aacaaaccgaaaatctaactaagcatacaaacagttcacaaaaattgtaaatgtgcctccatcattaagagaactaggaaatatctccgtcctggtactc |
6881250 |
T |
|
| Q |
217 |
aaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattatggttgcttgctccaacaaactagtgtctactttcaaaaa |
316 |
Q |
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| T |
6881249 |
aaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaagaattatggttgcttgctccaacaaactagtgtctactttcaaaaa |
6881150 |
T |
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| Q |
317 |
cc |
318 |
Q |
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| T |
6881149 |
cc |
6881148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 6881091 - 6881008
Alignment:
| Q |
362 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcat |
445 |
Q |
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| T |
6881091 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcat |
6881008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 35458386 - 35458263
Alignment:
| Q |
199 |
atctctgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgca-aaaagttaaaaggattatggttgct---tgctccaaca |
294 |
Q |
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| T |
35458386 |
atctccgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaaaattaaaaggattatagttgctcgctgctgcaaca |
35458287 |
T |
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| Q |
295 |
aactagtgtctactttcaaaaacc |
318 |
Q |
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|||| ||||||| ||||||||||| |
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| T |
35458286 |
aactggtgtctattttcaaaaacc |
35458263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 35458215 - 35458140
Alignment:
| Q |
370 |
tctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcat |
445 |
Q |
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| T |
35458215 |
tctatttcttcaagcttcaaaaaggttttctgcgaaatttattttctccgttagagggtttttctttctctttcat |
35458140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 6845765 - 6845715
Alignment:
| Q |
117 |
aacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaattgtaaa |
167 |
Q |
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| T |
6845765 |
aacaaactgaaaacctaactaagcatacaaacagttcacgaagattgtaaa |
6845715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 3180694 - 3180758
Alignment:
| Q |
374 |
tttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctc |
439 |
Q |
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| T |
3180694 |
tttctccaagattcaaagaggttttttgcaaaatttattttctccatc-gaaggttttcctttctc |
3180758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 3180543 - 3180585
Alignment:
| Q |
221 |
cctcttaatatttaattaattaaattcattaatagtgcaaaaa |
263 |
Q |
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| T |
3180543 |
cctctaaatatttaattaaattaattcattaatagtgcaaaaa |
3180585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 24214586 - 24214521
Alignment:
| Q |
212 |
tactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattat |
277 |
Q |
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| T |
24214586 |
tactcaaaatctcttaatatttaattagttatattaatcaatagtgcaaaaaagtaaaaagattat |
24214521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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