View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3540_high_1_N (Length: 853)
Name: NF3540_high_1_N
Description: NF3540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3540_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 314 - 848
Target Start/End: Complemental strand, 13726690 - 13726156
Alignment:
| Q |
314 |
tgccacaccacattaggaaaaggtctaaatcctacatggaaaggtcacaatcaattgatgctttgcaatcttttttgttcaatggattcattgattagaa |
413 |
Q |
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| T |
13726690 |
tgccacaccacattaggaaaaggtcaaaatcctacatggaaaggtcacaatcacttgatgctttgctatcttttttgttcaatgcattcattgattagaa |
13726591 |
T |
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| Q |
414 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
513 |
Q |
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| T |
13726590 |
tatcattatgtctattacttttacacccttcttcatatataaacacattccagaagaaaagagacaccacaaaaatcaatggagaataaaagcaaaaaac |
13726491 |
T |
|
| Q |
514 |
atgcaccacacatcttagtgttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgtttatcccaaaatggagtaaaaatcac |
613 |
Q |
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| T |
13726490 |
atgcaccacacatcttagtgtttccatatccattacaaggtcacataaaccctatgcttcaattctcgaaacgtttatcccaaaaaggagtaaaaataac |
13726391 |
T |
|
| Q |
614 |
actagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctaaattcaattcaaactgaaagcatttcagatggttatgacaatggagga |
713 |
Q |
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| T |
13726390 |
actagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctcaattcaattgaaactgaaagcatttcagatggttatgacaatggagga |
13726291 |
T |
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| Q |
714 |
atgtcatcagcagaaaatatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaaca |
813 |
Q |
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| T |
13726290 |
atgtcatcagcagaaaacatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaaca |
13726191 |
T |
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| Q |
814 |
accctgttgattgtgttgtctatgatgctttctta |
848 |
Q |
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| T |
13726190 |
accctgttgattgtgttgtctatgatgctttctta |
13726156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 52 - 274
Target Start/End: Complemental strand, 13727204 - 13726980
Alignment:
| Q |
52 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttg |
151 |
Q |
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| T |
13727204 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacgcttgctcatagtcttgctacggcgacctgttcttg |
13727105 |
T |
|
| Q |
152 |
gtcttgtccccat-atttttgagaattatcctccttgtattgaacatcttttgctacaatat-nnnnnnntttccccaagttggcattgttgttcttcct |
249 |
Q |
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| T |
13727104 |
gtcttgtcaccgtaatttttgagaattatcctccttgtattgaacatcttttgctacaatataaaaaaagtttccccaagttggcattgttgtccttcct |
13727005 |
T |
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| Q |
250 |
tctattgaaatgctcgatgttggtg |
274 |
Q |
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| T |
13727004 |
tctattgaaatgctcgatgttggtg |
13726980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 628
Target Start/End: Complemental strand, 13697432 - 13697352
Alignment:
| Q |
548 |
acaaggccacataaaccctatgcttcaattctcaaaacgtttatcccaaaatggagtaaaaatcacactagtgaacaccat |
628 |
Q |
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| T |
13697432 |
acaaggtcacataaacccaatgcttcaattctcaaaacgtttactccaaaaaggactaaaagtcacactagtaaacaccat |
13697352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 590
Target Start/End: Original strand, 13686360 - 13686416
Alignment:
| Q |
534 |
ttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgttta |
590 |
Q |
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| T |
13686360 |
ttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgttta |
13686416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 49525120 - 49525056
Alignment:
| Q |
129 |
cttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgtattga |
193 |
Q |
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| T |
49525120 |
cttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattga |
49525056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 8670279 - 8670176
Alignment:
| Q |
90 |
aagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgta |
189 |
Q |
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|||||| |||||| ||||||||||| ||||||| | |||| ||| |||| ||||||||||| || ||| || ||| ||||||| || || |||||||| |
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| T |
8670279 |
aagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgta |
8670180 |
T |
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| Q |
190 |
ttga |
193 |
Q |
| |
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|||| |
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| T |
8670179 |
ttga |
8670176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 30848246 - 30848197
Alignment:
| Q |
531 |
gtgttaccgtatccattacaaggccacataaaccctatgcttcaattctc |
580 |
Q |
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|||||| | |||||||||||||| |||||||| || |||||||||||||| |
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| T |
30848246 |
gtgttatcatatccattacaaggtcacataaatccaatgcttcaattctc |
30848197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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