View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3540_high_4 (Length: 367)
Name: NF3540_high_4
Description: NF3540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3540_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 39704731 - 39704399
Alignment:
| Q |
8 |
gagatgaagatcatattatcattatcacttattattattccaaccaaacacagataacattcatcataacatcataacctcgtaaacattttcatacttg |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39704731 |
gagaagaagatcatattatcattatcacttattattattccaaccaaacacagataacattcatcataacatcataacctcttaaacattttcatacttg |
39704632 |
T |
|
| Q |
108 |
taagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacgaccaacatccaatacacattatcaaccttgccatgatttatttcatcag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704631 |
taagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaaccttgccatgatttatttcatcag |
39704532 |
T |
|
| Q |
208 |
gtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgctctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |
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| T |
39704531 |
gtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatctt |
39704432 |
T |
|
| Q |
308 |
aagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |
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| T |
39704431 |
aagtgattgtggaaattgttgataatagaatgt |
39704399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 90 - 340
Target Start/End: Complemental strand, 39695740 - 39695490
Alignment:
| Q |
90 |
taaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacgaccaacatccaatacacattatcaaccttgc |
189 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
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| T |
39695740 |
taaacattttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgc |
39695641 |
T |
|
| Q |
190 |
catgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695640 |
catgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcat |
39695541 |
T |
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| Q |
290 |
tgctgttgatgtgctcttaagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
39695540 |
tgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgt |
39695490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 98 - 340
Target Start/End: Original strand, 39934381 - 39934623
Alignment:
| Q |
98 |
ttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacgaccaacatccaatacacattatcaaccttgccatgattt |
197 |
Q |
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|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39934381 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgattt |
39934480 |
T |
|
| Q |
198 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39934481 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttg |
39934580 |
T |
|
| Q |
298 |
atgtgctcttaagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39934581 |
atgtgctcttaagtgattgtggaaattgttgataatagaatgt |
39934623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 340
Target Start/End: Original strand, 39928696 - 39928976
Alignment:
| Q |
60 |
gataacattcatcataacatcataacctcgtaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacga |
159 |
Q |
| |
|
||||||||| |||||||||||| | |||| |||||||||||||||||||||| | ||| || | |||||||||||||||||| ||| | || | | || |
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| T |
39928696 |
gataacatttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtagga |
39928795 |
T |
|
| Q |
160 |
ccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaata |
259 |
Q |
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| |||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || |
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| T |
39928796 |
ctaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgta |
39928895 |
T |
|
| Q |
260 |
aaaagcaattcctataagcattgaaatcattgctgttgatgtgctcttaagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
| |
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|||||||| |||||||||||||||| | |||| |||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
39928896 |
aaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgttgataatagaatgt |
39928976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 38058936 - 38059047
Alignment:
| Q |
60 |
gataacattcatcataacatcataacctcgtaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacga |
159 |
Q |
| |
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||||||||| |||||||||| | | |||| || |||||||||||||||||| | ||| || | |||||||||| |||||||||| | ||||| || | |
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| T |
38058936 |
gataacatttatcataacattacatcctcttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaa |
38059035 |
T |
|
| Q |
160 |
ccaacatccaat |
171 |
Q |
| |
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|||||||||||| |
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| T |
38059036 |
ccaacatccaat |
38059047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 38061607 - 38061653
Alignment:
| Q |
294 |
gttgatgtgctcttaagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
38061607 |
gttgatgtgctcttcagtgactgtggaaattgttgataatagaatgt |
38061653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
189 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagc |
265 |
Q |
| |
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||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||| | |||||| |
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| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 4847209 - 4847144
Alignment:
| Q |
275 |
aagcattgaaatcattgctgttgatgtgctcttaagtgattgtggaaattgttgatagtagaatgt |
340 |
Q |
| |
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||||||||||||||||| |||||||||||| || | ||||||||||||||| ||||| ||||| |
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|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgt |
4847144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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