View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3540_high_8 (Length: 333)
Name: NF3540_high_8
Description: NF3540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3540_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 51403118 - 51402776
Alignment:
| Q |
1 |
cagtattcctccctgcgttgaacattttcacataagaaacttacaaaagtgacagcaacattcaataggcaacatacaaaagttttacttgcaacagaag |
100 |
Q |
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| T |
51403118 |
cagtattcctccctgcattgaacattttcacataagaaacttacaaaagtgacagcaacattcaataggcaacatacaaaagttttacttgctacagaag |
51403019 |
T |
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| Q |
101 |
aaattaagtttca---------cttatatcttaatataaaacaaaattctaaacattttaattttatattgaccaccttaatataatgaccaaagtcgca |
191 |
Q |
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| T |
51403018 |
aaattaagtttcaatgattccacttatatcttaatataaaacaaaattctaaacattttaattttatattgaccaccttaatataatgaccaacgttgca |
51402919 |
T |
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| Q |
192 |
agaccagcgtagatgcacgactattccactaattcacaaaacaaacaaatttctttttgatgtataagctagtcggaaactaatccctc-gaaatctatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
51402918 |
agaccagcgtagatgcacgactattccactaattcacaaaacaaacaaatttctatttgatgtgtaagctagtcggaaactaatccctcagaaatctatt |
51402819 |
T |
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| Q |
291 |
cagaaggcaaaattctctttatttgaaatcaaaggatggtgtg |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402818 |
cagaaggcaaaattctctttatttgaaatcaaaggatggtgtg |
51402776 |
T |
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