View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3540_high_9 (Length: 314)
Name: NF3540_high_9
Description: NF3540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3540_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 302
Target Start/End: Complemental strand, 29439468 - 29439206
Alignment:
| Q |
28 |
aacaagtgtcaaaatctgaaccaagagattaaaccaatggtggata--gaacaaagtcacataacttttcccaccc-aaaagttattgaatccgaatccc |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
29439468 |
aacatgtgtcaaaatctgaaccaagagattaaaccaatggtggatattgaacaaagtcacataacttttcccaccctaaaagttattgaatccggatccc |
29439369 |
T |
|
| Q |
125 |
tatcttttatccaaacctcttcatttcttcacacactccactctttgtgctaacacaaactcatgaactcgtgtctcctcatcactgtcaaattccattg |
224 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29439368 |
tatattttatccaaacctcttcatttcttcacacactccactctttgtgctaacacaaactcatgaactcg--------------tgtcaaattccattg |
29439283 |
T |
|
| Q |
225 |
ttgtcttcatgtttaatggagtttattgctgaagttggttttttgcaccaccctcatcatcttttcacacccttctct |
302 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29439282 |
ttgtcttcatg-ttaatggagtttattgctgaagttggttttttgcaccaccctcatcaccttttcacacccttctct |
29439206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 5431027 - 5430936
Alignment:
| Q |
34 |
tgtcaaaatctgaaccaagagattaaaccaatggtggata--gaacaaagtcacataacttttcccacccaaaagttattgaatccgaatcc |
123 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||| || |||||||||||||||||||| | ||||||| |||||||||| |||| |
|
|
| T |
5431027 |
tgtcaaaatctgaagcaaagggttaaaccaatggtggatattgactaaagtcacataacttttccctctcaaaagtcattgaatccggatcc |
5430936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 36009032 - 36008935
Alignment:
| Q |
28 |
aacaagtgtcaaaatctgaaccaagagattaaaccaatggtggata--gaacaaagtcacataacttttcccacccaaaagttattgaatccgaatcc |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
36009032 |
aacatgtgtcaaaatctgaaccaagagattaaaccaatgatagatattgaacaaagtcatataacttttcccaccaaaaagttgctgaatccggatcc |
36008935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 36009689 - 36009730
Alignment:
| Q |
28 |
aacaagtgtcaaaatctgaaccaagagattaaaccaatggtg |
69 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36009689 |
aacatgtgtcaaaatctgaaccaagagattaaaccaatggtg |
36009730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 41976858 - 41976760
Alignment:
| Q |
28 |
aacaagtgtcaaaatctgaaccaagagattaaaccaatggtggata--gaacaaagtcacataacttttcccacccaaaagttattgaatccgaatccc |
124 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||| |||||||||||| || |||||||| || |||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
41976858 |
aacatgtgttaaaatctgaaccaaaagattaattcaatggtggatattgagcaaagtcatatgacttttcccaccaaaaagttactgaatccggatccc |
41976760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 34607104 - 34607149
Alignment:
| Q |
77 |
caaagtcacataacttttcccacccaaaagttattgaatccgaatc |
122 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
34607104 |
caaagtctcataacttttccctcccaaaagttactgaatctgaatc |
34607149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 51326838 - 51326793
Alignment:
| Q |
28 |
aacaagtgtcaaaatctgaaccaagagattaaaccaatggtggata |
73 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
51326838 |
aacatgtgtcaaaatctgaaccaaaagattaaactaatggtagata |
51326793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University