View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3540_low_1 (Length: 356)
Name: NF3540_low_1
Description: NF3540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3540_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 341
Target Start/End: Complemental strand, 34576603 - 34576294
Alignment:
| Q |
23 |
ttgaagcctcgtcgcaaaaaacctaaaatgcaagtttcatactagttaaaaatttaaaaattttgtgcgtagactcctcattagtgctaattggtttcag |
122 |
Q |
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| T |
34576603 |
ttgaagcttcgtcgcaaaaaacctaaaatgcaagtttcatactagttaaaaatttaaaaattttgtgcgtagactcctcattagtgctaattggtttcag |
34576504 |
T |
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| Q |
123 |
ggttccgatgaaagaagtccagatcaatggtggttaaacttgaatgtgtggacaagccacgatgacacttgacatatcatcacatctaacaaaactacta |
222 |
Q |
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| T |
34576503 |
ggttctgatgaaagaagtccagatcaatggtggttaaacttgaatgtgtggacaagccacgatgac---------atcatcacatctaacaaaactacta |
34576413 |
T |
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| Q |
223 |
gacggagtgagatcattttaactaatgttaaataattaggggaaaccacttaatatttcttacattcagatcccaaattgcaagacacttacaaatttca |
322 |
Q |
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| T |
34576412 |
gacggagtgagatcattttaactaatgttaaacaattaggggaaaccacttaatatttcttacattcagatcccaaattgcaagacacttgcaaatttca |
34576313 |
T |
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| Q |
323 |
agatctaaaatggtggttt |
341 |
Q |
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| T |
34576312 |
agatctaaaatggtggttt |
34576294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 19341560 - 19341468
Alignment:
| Q |
48 |
aaatgcaagtttcatactagttaaaaatttaaaaattttgtgcgtagactcctcattagtgctaattggtttcagggttccgatgaaagaagtc |
141 |
Q |
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| T |
19341560 |
aaatgcaagtttcatactagttaaaaatttaatt-tttaatgtgtaaactcctcataaatgctaattggttgtatggtttcgatgatagaagtc |
19341468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 1793657 - 1793592
Alignment:
| Q |
53 |
caagtttcatactagttaaaaatttaaaaattttgtgcgtagactcctcattagtgctaattggttt |
119 |
Q |
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| T |
1793657 |
caagtttcatactggttaaaaacttaaat-ttttatgagtagacttctcattattgctaattggttt |
1793592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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