View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3541_high_1 (Length: 419)
Name: NF3541_high_1
Description: NF3541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3541_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Original strand, 7559880 - 7560257
Alignment:
| Q |
28 |
gcaaattaactatagtctctcctctatggaactcctgcatagccatcagtctcctattttcttcttcagttgtggacatcttcacaatttttcatcattc |
127 |
Q |
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| T |
7559880 |
gcaaattaactatagtctctcctctatggaactcctgcatagccatcagtctcctattttcttcttcagttgtggacatct-cacaatttttcatcattc |
7559978 |
T |
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| Q |
128 |
cttaatagttagatataatttactttatcttataagtgaaattaacatcgatgttatgtttttcatagaagtattgtgattcatttgatttatatgtctg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7559979 |
cttaatagttagatataatttactttatcttataagtgaaattaacatcgatgttatgtttttcatagaagtattgtgattcatttgatttatatgtctg |
7560078 |
T |
|
| Q |
228 |
accactgcaggtaatcggaaatatgaacacttgctgaaatttgagagag---ctgaaaaccttacattcttcaaaacagatgtcttgaactatatttgaa |
324 |
Q |
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| T |
7560079 |
accactgcaggtaatcggaaatatgaacacttgctgaaatttgagagagcttctgaaaaccttacattcttcaaaacagatgtcttgaaatatatttgaa |
7560178 |
T |
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| Q |
325 |
tttgtttactccgtcggatgcagtgtttagtatattgttaaaactactgaattgatagtgtttactttttatctctgct |
403 |
Q |
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| T |
7560179 |
tttgtttactccgtcggatgcagtgtttactatattgttaaaactactgaattgatagtgtttactttttatctctgct |
7560257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 1739704 - 1739817
Alignment:
| Q |
201 |
ttgtgattcatttgatttatatgtctgaccactgcaggtaatcggaaatatgaacacttgctgaaatttgagagag---ctgaaaaccttacattcttca |
297 |
Q |
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| T |
1739704 |
ttgtgattcatttgaagtgtatgtctgacaactgcaggtagtccgaaatatgaacacttgctgaaactggaaaaagcttctgagaaccttacactcttca |
1739803 |
T |
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| Q |
298 |
aaacagatgtcttg |
311 |
Q |
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|| ||||| ||||| |
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| T |
1739804 |
aagcagatatcttg |
1739817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 2010565 - 2010471
Alignment:
| Q |
220 |
tatgtctgaccactgcaggtaatcggaaatatgaacacttgctgaaatttgagagag---ctgaaaaccttacattcttcaaaacagatgtcttg |
311 |
Q |
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|||||||||| |||||||||| || ||||||||||||||||||||| | || | || |||| ||||||||| |||||||| ||||| ||||| |
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| T |
2010565 |
tatgtctgacaactgcaggtagtccaaaatatgaacacttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttg |
2010471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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