View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3541_high_3 (Length: 381)
Name: NF3541_high_3
Description: NF3541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3541_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 71 - 368
Target Start/End: Complemental strand, 5872357 - 5872059
Alignment:
| Q |
71 |
tgtttacagtcatccgataaacaaaaatgttaa-gactttttctatgatcacctcaaaagtcgcagacatgtttggttgtggtggactaacaatgtaaaa |
169 |
Q |
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| T |
5872357 |
tgtttacagtcatccgataaacaaaaatgttaaagactttttctatgatcacctcaaaagtcgcagacatgtttggttgtggtggactaacaatgtaaaa |
5872258 |
T |
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| Q |
170 |
cttttaacactgtcgatgcattcaaattaaactgtttttcaatagactgaaatcgcttgactgtgtcaatttaggattctctaaatgcaaagaatacagg |
269 |
Q |
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| T |
5872257 |
cttttaacactgtcgatgcattcaaattaaactgtttttcaatagactgaaatcgcttgactgtgtcaatttaggattctctaaatgcaaagaatacagg |
5872158 |
T |
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| Q |
270 |
tccaataacctccttcaacaagaaaaccaaaaatttctattcaatactcaaaacaacataatataaaaagtgaaaaggttagagaaagtactattgatg |
368 |
Q |
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| T |
5872157 |
tccaataacctccttcaacaagaaaaccaaaaatttctattcaatactcaaaacaacataatataaaaagtgaaaaggttagagaaagtactattgatg |
5872059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5872437 - 5872385
Alignment:
| Q |
18 |
actgtaggggtgagcacaacccttgtaaaaattagaaggtccacggctcaaaa |
70 |
Q |
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| T |
5872437 |
actgtaggggtgagcacaacccttgtaaaaattagaaggtccacagctcaaaa |
5872385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 6082862 - 6082787
Alignment:
| Q |
127 |
aagtcgcagacatgtttggttgtggtggactaacaatgtaaaacttttaacactgtcgatgcattcaaattaaact |
202 |
Q |
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| T |
6082862 |
aagtcacatacatgattagttgtgatgtgctaacaatgtaaaacttttcacactggcgatgcatgaaaattaaact |
6082787 |
T |
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