View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3541_high_4 (Length: 301)
Name: NF3541_high_4
Description: NF3541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3541_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 12844451 - 12844176
Alignment:
| Q |
5 |
aattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaatttnnnnnnnctgtggaaactctgaaacgaagaaattggt |
104 |
Q |
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| T |
12844451 |
aattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaat--aaaaaaactgtggaaactctgaaacgaagaaattggt |
12844354 |
T |
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| Q |
105 |
tgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaaagaacgaac |
204 |
Q |
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| T |
12844353 |
tgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattct---gattacagtgatagaaaagaacgaac |
12844257 |
T |
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| Q |
205 |
gcgccaaagaaaagaaatctttacaccgtcattctcatggcttacacggtcaccgatctaggtcgtggcagatatgaaaac |
285 |
Q |
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| T |
12844256 |
gcgccaaagaaaagaaatctttacaccgtcattctcatggcttacaccgtcaccgatctaggtcgtggcagatatgaaaac |
12844176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 12861061 - 12861341
Alignment:
| Q |
1 |
agataattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaatttnnnnnnnctgtggaaactctgaaacgaagaaat |
100 |
Q |
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| T |
12861061 |
agataattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaata-aaaaaaactgtggaaactctgaaacgaagaaat |
12861159 |
T |
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| Q |
101 |
tggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaaagaac |
200 |
Q |
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| T |
12861160 |
tggttgttacaaccgttttataaataaatcctggcgcgggaaattccaaattgctctaaccgtttctttcattct---gattacagtgatagaaaagaac |
12861256 |
T |
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| Q |
201 |
gaacgcgccaaagaaaagaaatctttacaccgtcattctcatggcttacacggtcaccgatctaggtcgtggcagatatgaaaac |
285 |
Q |
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| T |
12861257 |
gaacgcgacaaagaaaagaaatctttacaccgtcattctcatggcttacacggtcaccgatctaggtcgtgacagatatgaaaac |
12861341 |
T |
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