View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3541_low_2 (Length: 383)

Name: NF3541_low_2
Description: NF3541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3541_low_2
NF3541_low_2
[»] chr8 (1 HSPs)
chr8 (239-338)||(28460388-28460487)
[»] chr4 (2 HSPs)
chr4 (1-84)||(38934181-38934266)
chr4 (155-198)||(38934278-38934321)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 28460487 - 28460388
Alignment:
Q  239 gaatatgcataacgacaaccatatagataagaaccagagagaaagtctcctgtatattcagagaagatgtttaaaaataacacagatgctgtttgatttt 338  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28460487 gaatatgcataacgacaaccatctagataagaaccagagagaaagtctcctgtatattcagagaagatgtttaaaaataacacagatgctgtttgttttt 28460388  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38934181 - 38934266
Alignment:
Q  1 caatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaatgttttaattttctttg--ttgagagaagaaatgtag 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  38934181 caatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaatgttttaattttctttgttttgagagaagaaatgtag 38934266  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 38934278 - 38934321
Alignment:
Q  155 caagaagaagaaggaaatgtcttagttgatgatgcgagataaag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38934278 caagaagaagaaggaaatgtcttagttgatgatgcgagataaag 38934321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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