View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3542_low_1 (Length: 565)
Name: NF3542_low_1
Description: NF3542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3542_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 29439206 - 29439473
Alignment:
| Q |
12 |
agagaagggtgtgaaaagatgatgagggtggtgcaaaaaaccaacttcagcaataaactccattaaacatgaagacaacaatggaatttgacagtgatga |
111 |
Q |
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| T |
29439206 |
agagaagggtgtgaaaaggtgatgagggtggtgcaaaaaaccaacttcagcaataaactccattaa-catgaagacaacaatggaatttgaca------- |
29439297 |
T |
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| Q |
112 |
ggagacacgagttcatgagtttgtgttagcacaaagagtggagtgtgtgaagaaatgaagaggtttggataaaagatagggattcggattcaataacttt |
211 |
Q |
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| T |
29439298 |
-------cgagttcatgagtttgtgttagcacaaagagtggagtgtgtgaagaaatgaagaggtttggataaaatatagggatccggattcaataacttt |
29439390 |
T |
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| Q |
212 |
t-gggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacatgttccaac |
291 |
Q |
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| T |
29439391 |
tagggtgggaaaagttatgtgactttgttcaatatccaccattggtttaatctcttggttcagattttgacacatgtttcaac |
29439473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 5430936 - 5431027
Alignment:
| Q |
191 |
ggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgaca |
280 |
Q |
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| T |
5430936 |
ggatccggattcaatgacttttgagagggaaaagttatgtgactttagtcaatatccaccattggtttaaccctttgcttcagattttgaca |
5431027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 245 - 550
Target Start/End: Complemental strand, 36009730 - 36009412
Alignment:
| Q |
245 |
caccattggtttaatctcttggttcagattttgacacatgttccaaccnnnnnnnaattnnnnnnnnnnnnnnnnntcaaattgagatccgtacccatca |
344 |
Q |
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| T |
36009730 |
caccattggtttaatctcttggttcagattttgacacatgttccaacctttttttaattaaaaacaaaagcaaaaatcaaattgagatccgtacccatca |
36009631 |
T |
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| Q |
345 |
ccccttctacaaacctccgccttcaacccgctgttgaccgctgtgcgccgcctccctgcttgtcgtgtgccgcccatcttcccttcttcatcgttcagtc |
444 |
Q |
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| T |
36009630 |
ccccttccacaaacctccgccttcaacctgctgttgaccgctgtgcgccgcctccctgcttgtcgtgtgccgcccatcttcccttcttcatcgttcagtc |
36009531 |
T |
|
| Q |
445 |
aaggttgtttactgggtaaaaatcacaacttactggtattttctaat-------------ttctgtaaagatgattatgtccaacacattgaaagaattt |
531 |
Q |
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| T |
36009530 |
aaggttgtttactgggtaaaaatcacagcttactggtattttctaatgtctcaatttttcttctgtaaagatgattctgtccaacacattgaaagaattt |
36009431 |
T |
|
| Q |
532 |
ttgagatactagagaatat |
550 |
Q |
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| T |
36009430 |
ttgagatactagagaatat |
36009412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 36008935 - 36009038
Alignment:
| Q |
191 |
ggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacatgttcc |
288 |
Q |
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|||| |||||||| ||||||| ||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36008935 |
ggatccggattcagcaactttttggtgggaaaagttatatgactttgttcaatatctatcattggtttaatctcttggttcagattttgacacatgttcc |
36009034 |
T |
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| Q |
289 |
aacc |
292 |
Q |
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|||| |
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| T |
36009035 |
aacc |
36009038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 41976760 - 41976858
Alignment:
| Q |
190 |
gggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacatgtt |
286 |
Q |
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||||| |||||||| |||||||| |||||||||||| || |||||||| || |||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
41976760 |
gggatccggattcagtaactttttggtgggaaaagtcatatgactttgctcaatatccaccattgaattaatcttttggttcagattttaacacatgtt |
41976858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 34606361 - 34606445
Alignment:
| Q |
210 |
tttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacatgttccaacc |
292 |
Q |
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| T |
34606361 |
tttgggagggaaaagttatgtgattttgatcaatatccacccttaatttaatttgttgtttcagaatttgaaacatgttccaacc |
34606445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 34607149 - 34607104
Alignment:
| Q |
192 |
gattcggattcaataacttttgggtgggaaaagttatgtgactttg |
237 |
Q |
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||||| |||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
34607149 |
gattcagattcagtaacttttgggagggaaaagttatgagactttg |
34607104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 51326793 - 51326843
Alignment:
| Q |
241 |
tatccaccattggtttaatctcttggttcagattttgacacatgttccaac |
291 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
51326793 |
tatctaccattagtttaatcttttggttcagattttgacacatgtttcaac |
51326843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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