View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3542_low_3 (Length: 201)

Name: NF3542_low_3
Description: NF3542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3542_low_3
NF3542_low_3
[»] chr3 (14 HSPs)
chr3 (14-187)||(28053200-28053373)
chr3 (14-187)||(28063625-28063798)
chr3 (14-179)||(28147266-28147440)
chr3 (14-179)||(28081446-28081620)
chr3 (17-169)||(28131660-28131821)
chr3 (14-179)||(28511028-28511202)
chr3 (14-179)||(28482216-28482390)
chr3 (16-179)||(27974250-27974422)
chr3 (14-179)||(27918075-27918249)
chr3 (14-78)||(28183577-28183641)
chr3 (14-179)||(17746550-17746724)
chr3 (14-179)||(19047870-19048044)
chr3 (14-72)||(28002018-28002076)
chr3 (131-179)||(28183470-28183518)
[»] scaffold0257 (1 HSPs)
scaffold0257 (14-179)||(17052-17227)
[»] chr7 (1 HSPs)
chr7 (14-79)||(8693716-8693781)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 28053373 - 28053200
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaattactttggagttattctttaccacg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053373 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaattactttggagttattctttaccacg 28053274  T
Q  114 agtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaatgagaataa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053273 agtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaatgagaataa 28053200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 28063798 - 28063625
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaattactttggagttattctttaccacg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063798 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaattactttggagttattctttaccacg 28063699  T
Q  114 agtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaatgagaataa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063698 agtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaatgagaataa 28063625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 28147440 - 28147266
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaat---------tactttggagttattc 104  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||          ||||||||||||||||    
T  28147440 cataggcagaacatccaaatcaatgtcttccaaagctaagttcatttgctgttcatttatttcattcagacaaaagatactttctactttggagttattc 28147341  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
     |||||| |||||||| || ||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||    
T  28147340 gttaccatgagtctctccaaagcgagaaaattatccacattcccactcaattcctgtaataaatgaatgggaaat 28147266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 28081620 - 28081446
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||          ||||| |||||||||     
T  28081620 cataggcagaacatccaaatcaatgactttcaaagctaagttcattttctgttcatttatttcattgagacaaacgatactttctacttcggagttatta 28081521  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    | ||| || ||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  28081520 tatacaacaagtttctttaaagcgagaaaatgatccacattcccactcaattcctgcaataaatgaatgggaaat 28081446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 28131821 - 28131660
Alignment:
Q  17 aggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaat---------tactttggagttattcttt 107  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| | ||||||         |||||||||||||||||||    
T  28131821 aggcaaaacatccaaatcaatgtctttcaaagctaagttcatttgctgttcatttatttcatttatacaaatgatactttctactttggagttattcttt 28131722  T
Q  108 accacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatg 169  Q
    || | |||||||| || || ||||||||| |||||| ||||||||||||||||||| |||||    
T  28131721 actatgagtctctccaaagagagaaaatggtccacattcccactcaattcctgcaacaaatg 28131660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 28511028 - 28511202
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    |||||||| ||||| |||||||||| |||||||||||||| ||| ||| |||||||||| ||||||||||||||         ||||||||||||||||     
T  28511028 cataggcaaaacattcaaatcaatgtctttcaaagctaagctcagttgttgttcatttatttcattcagacaaaagacatcttttactttggagttatta 28511127  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    ||||||| |||| ||| || ||| ||||||| ||||| | |||||||  |||||| ||||||||||||| |||||    
T  28511128 tttaccaagagtgtctccaaagctagaaaattatccatattcccacttgattcctacaataaatgaatgggaaat 28511202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 28482216 - 28482390
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    |||||||||||||| |||||||||  |||||||||||||| ||| ||| |||||||||| ||||||||||||||          |||||||||||||||     
T  28482216 cataggcagaacattcaaatcaatttctttcaaagctaagctcagttgttgttcatttatttcattcagacaaaagacatcttctactttggagttatta 28482315  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    ||||||| |||| ||| || ||| ||||||| ||||| | |||||||  |||||| ||||||||||||| |||||    
T  28482316 tttaccatgagtgtctccaaagctagaaaattatccatattcccacttgattcctacaataaatgaatgggaaat 28482390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 27974422 - 27974250
Alignment:
Q  16 taggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaat---------tactttggagttattctt 106  Q
    |||| |||||||||||||||||   || |||| || || |||||||||||||||||| |||||| |||||||          |||| |||||||||| ||    
T  27974422 taggaagaacatccaaatcaattctttccaaacctgagatcatttgatgttcatttatttcatttagacaaacaatactttctactatggagttattatt 27974323  T
Q  107 taccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    ||||||| | |||||   ||||||||||||||||||| ||||||||||||||| || |||| ||||| |||||    
T  27974322 taccacgggactcttagaagcgagaaaatgatccacattcccactcaattcctacagtaaacgaatgagaaat 27974250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 27918249 - 27918075
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    |||||||||||||| ||||| ||||| || |||| |||| |||||||| |||||||||| |||||| |||||||          |||||||||||||||     
T  27918249 cataggcagaacattcaaataaatgaattccaaacctaatttcatttgttgttcatttatttcattgagacaaaagatgctttctactttggagttatta 27918150  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    ||||||||||||||   || ||||  |||||| || ||| |||||||||| ||||| |||||| ||||| |||||    
T  27918149 tttaccacgagtcttcccaaagcgctaaaatgctcgacattcccactcaaatcctgtaataaacgaatgggaaat 27918075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28183641 - 28183577
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcat 78  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||| |||||    
T  28183641 cataggcagaacatccaaatcaatgtcttccaaagctaagttcatttgccgttcatttatttcat 28183577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 17746550 - 17746724
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    ||||||||||||| |||||  |||  ||| |||||||||||||||||| |||||||||  |||||| |||||||          |||||| ||||| ||     
T  17746550 cataggcagaacacccaaaataatttcttccaaagctaagttcatttgctgttcatttctttcattgagacaaaatatactttctactttagagtttttg 17746649  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    |||||   |||| | | || |||  ||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  17746650 tttacattgagtgtttccaaagcacgaaaatgttccacatccccactcaattcctgcaataaatgaatgagaaat 17746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 19047870 - 19048044
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttattc 104  Q
    ||||||||||||| |||||  |||  ||| |||||||||||||||||| |||||||||  |||||| |||||||          |||||| ||||| ||     
T  19047870 cataggcagaacacccaaaataatttcttccaaagctaagttcatttgctgttcatttctttcattgagacaaaatatactttctactttagagtttttg 19047969  T
Q  105 tttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    |||||   |||| | | || |||  ||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  19047970 tttacattgagtgtttccaaagcacgaaaatgttccacatccccactcaattcctgcaataaatgaatgagaaat 19048044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 28002076 - 28002018
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcattta 72  Q
    |||||||||||||  ||| ||||| | ||||||||||||||||||||| ||||||||||    
T  28002076 cataggcagaacaagcaattcaataattttcaaagctaagttcatttgttgttcattta 28002018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 28183518 - 28183470
Alignment:
Q  131 aaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    |||||| || ||| ||||||||||||||||||||||||||||| |||||    
T  28183518 aaaatgttcgacattcccactcaattcctgcaataaatgaatgggaaat 28183470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 17227 - 17052
Alignment:
Q  14 cataggcag-aacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa---------ttactttggagttatt 103  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||          |||||||||||||||    
T  17227 cataggcaggaacatccaaatcaatgtatttcaaagctaagttcatttgctgttcatttatttcattcagacaaaagatactttctactttggagttatt 17128  T
Q  104 ctttaccacgagtctcttcagagcgagaaaatgatccacaatcccactcaattcctgcaataaatgaatgtgaaat 179  Q
    |||||| | |||||||| || ||||||||||| ||||| | |||||||  ||| |||||||||||||||| |||||    
T  17127 ctttacaatgagtctctccaaagcgagaaaattatccatattcccactagattgctgcaataaatgaatgggaaat 17052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8693716 - 8693781
Alignment:
Q  14 cataggcagaacatccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcatt 79  Q
    |||||| ||||||||||||||||| |  | |||||||||||||||||| |||||||||| ||||||    
T  8693716 cataggaagaacatccaaatcaataaactccaaagctaagttcatttgctgttcatttatttcatt 8693781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University