View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3543_high_2 (Length: 388)
Name: NF3543_high_2
Description: NF3543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3543_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 26955397 - 26955028
Alignment:
| Q |
1 |
tggtgagagaactcatagatcgaagctcttaatagttcttaatcactacaaaataaccgtgtgataattatgataataaatagtgaaagaattatgcact |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955397 |
tggtgagagaactcatagatcgaagctcttaatagctcttaattactacaatataaccgtgtgataattatgataataaatagtgaaagaattatgcact |
26955298 |
T |
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| Q |
101 |
accagctgatcaaacacgccccttgcaagattggagtgtcgtgaatagttttgatcttgtttcttagatgttgatgacggaattttgagagaggtttggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955297 |
accagctgatcaaacacgccccttgcaagattggagtgtcgagaatagttttgatcttgtttcttagatgttgatgacggaattttgagagaggtttggt |
26955198 |
T |
|
| Q |
201 |
gaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttccttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgt |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26955197 |
gaaacaatcagctcattgatcaatggggttgacatgtttgactttgagttttccttgttgtaccaattggtgaacaaagtgaatatcaatggagatgtgt |
26955098 |
T |
|
| Q |
301 |
ttcatgtgtgtgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagaga |
370 |
Q |
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| T |
26955097 |
ttcatgtgtgtgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagaga |
26955028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 338
Target Start/End: Original strand, 26590040 - 26590213
Alignment:
| Q |
165 |
tagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttccttgttgtacc |
264 |
Q |
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|||| |||||||||| ||| |||||||||||||||| | |||||| ||| |||| ||||||||||| | | ||||||||| |||||||||| |
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| T |
26590040 |
tagaagttgatgacgcgctttggagagaggtttggtgaggaagtcagctagttggtcaactgtgttgacatgatgaattttgagtttctgttgttgtacc |
26590139 |
T |
|
| Q |
265 |
aattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
338 |
Q |
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|| | ||||||||||||| ||||||| ||| ||||||||| | |||||||||| | |||||| |||||||| |
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| T |
26590140 |
aaatcgcgaacaaagtgaatgtcaatggcgatatgtttcatgcgagtgtggtacataggattgtgcgtaagata |
26590213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 3544124 - 3543940
Alignment:
| Q |
154 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
253 |
Q |
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|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
3544124 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
3544025 |
T |
|
| Q |
254 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
338 |
Q |
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| T |
3544024 |
cttgttggactagatcacgaacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
3543940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 338
Target Start/End: Original strand, 34695640 - 34695824
Alignment:
| Q |
154 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
253 |
Q |
| |
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|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
34695640 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
34695739 |
T |
|
| Q |
254 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
338 |
Q |
| |
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||||||| || | | | ||||| ||||| ||||||||||||||||||||| | ||||| || || | ||| ||||||||||| |
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| T |
34695740 |
cttgttggactagatcacggacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
34695824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 5403137 - 5402953
Alignment:
| Q |
154 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
253 |
Q |
| |
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|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
5403137 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
5403038 |
T |
|
| Q |
254 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
338 |
Q |
| |
|
||||||| || | | | ||||| ||||| ||||||||||||||||||||| | ||||| || || | ||| ||||||||||| |
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|
| T |
5403037 |
cttgttggactagatcacggacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
5402953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 6517192 - 6517298
Alignment:
| Q |
154 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
253 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
6517192 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
6517291 |
T |
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| Q |
254 |
cttgttg |
260 |
Q |
| |
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||||||| |
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| T |
6517292 |
cttgttg |
6517298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 29251646 - 29251698
Alignment:
| Q |
126 |
caagattggagtgtcgtgaatagttttgatcttgtttcttagatgttgatgac |
178 |
Q |
| |
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|||||||| |||||||| | || | ||||||||||||||||||||||||||| |
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|
| T |
29251646 |
caagattgaagtgtcgttagtaactctgatcttgtttcttagatgttgatgac |
29251698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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