View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3543_high_7 (Length: 253)
Name: NF3543_high_7
Description: NF3543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3543_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32746843 - 32746608
Alignment:
| Q |
1 |
tttgataccaactttgatggaattttctcattcagttctttgactaatcattctaaacttgaggttttccttctgtcacgaatgaaaaacaataaattgc |
100 |
Q |
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| T |
32746843 |
tttgataccaactttgatggaattttctcattcagttctttgactaatcattctaaacttgaagttttccttctgtcacgaatgaaaaacaataaattgc |
32746744 |
T |
|
| Q |
101 |
atgtggaaactgaagaaaatccatcatggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32746743 |
atgtggaaactgaagaaaatccatcatggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttt |
32746644 |
T |
|
| Q |
201 |
tcctacttttttattgaatcagcatgagctacagct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32746643 |
tcctacttttttattgaatcagcatgagctacagct |
32746608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4913832 - 4913606
Alignment:
| Q |
1 |
tttgataccaactttgatggaattttctcattcagttctttgactaatcattctaaacttgaggttttccttctgtcacgaatgaaaaacaataaattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| || ||| ||||| ||| |
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| T |
4913832 |
tttgataccaactttgatggaattttctcatttagttctttgaataatcattctaaacttgaagttttccttctgtcaccaa---aaacaaataacttgt |
4913736 |
T |
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| Q |
101 |
atgtggaaactgaagaaaatccatcatggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttt |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
4913735 |
atgtggaaactgaagaaagtccatcatggcaccctacttttcaattaaaagttctccaacttagaaattgctttctaaattcaaagagagatggaacttt |
4913636 |
T |
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| Q |
201 |
tcctacttttttattgaatcagcatgagct |
230 |
Q |
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|||||||||| || | ||||||||||||| |
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| T |
4913635 |
tcctacttttctactttatcagcatgagct |
4913606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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