View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3543_low_11 (Length: 236)
Name: NF3543_low_11
Description: NF3543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3543_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 50764218 - 50764427
Alignment:
| Q |
12 |
cataggggtcaaaagtgcaattaagccttctttttatgattgtgcttcagtttactcccgcaaccagtatggccaaggttatcggtcccttggtttctgt |
111 |
Q |
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| T |
50764218 |
cataggggtcaaaagtgcaattaagccttctttttatgattgtgcttcagtttattcccgcaaccagtatggccaaggttatcggtcccttggtttctgt |
50764317 |
T |
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| Q |
112 |
ttttgtaatatatgttacataaggtgatgtttctcactatgtggaactattaaaaaactataactatggcatactatttctctttggctagtaatgtgct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50764318 |
ttttgtaatatatgttacataaggtgatgtttctcactatgtggaactattaaaaaactataactatggcatactatttctctttggctcgtaatgtgct |
50764417 |
T |
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| Q |
212 |
ttgtattaag |
221 |
Q |
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|||||||||| |
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| T |
50764418 |
ttgtattaag |
50764427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 5805990 - 5805868
Alignment:
| Q |
39 |
ttctttttatgattgtgcttcagtttactcccgcaaccagtatggc-----caaggttatcggtcccttggtttctgtttttgtaatatatgttacataa |
133 |
Q |
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|||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
5805990 |
ttctttttatgattgtaattcagtttactcca-ctaccagtatggcatggccaaggttatcggtcccttggtttccgttttggtaatatatgttacataa |
5805892 |
T |
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| Q |
134 |
ggtgatgtttctcactatgtggaa |
157 |
Q |
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| T |
5805891 |
ggtgatgtttctcattaagtggaa |
5805868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 52310827 - 52310788
Alignment:
| Q |
13 |
ataggggtc-aaaagtgcaattaagccttctttttatgat |
51 |
Q |
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| T |
52310827 |
ataggggtccaaaagtgcaattaagccttctttttatgat |
52310788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 50591795 - 50591829
Alignment:
| Q |
15 |
aggggtcaaaagtgcaattaagccttctttttatg |
49 |
Q |
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| T |
50591795 |
aggggtcaaaagtgcaattaagccttatttttatg |
50591829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 26932608 - 26932575
Alignment:
| Q |
13 |
ataggggtcaaaagtgcaattaagccttcttttt |
46 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
26932608 |
ataggggtcaaaagtgcaattaagcctttttttt |
26932575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 26171494 - 26171531
Alignment:
| Q |
13 |
ataggggtc-aaaagtgcaattaagccttctttttatg |
49 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
26171494 |
ataggggtccaaaagtgcaattaagccttctttttatg |
26171531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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