View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3543_low_2 (Length: 401)

Name: NF3543_low_2
Description: NF3543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3543_low_2
NF3543_low_2
[»] chr1 (3 HSPs)
chr1 (11-385)||(25026342-25026729)
chr1 (301-364)||(30693332-30693395)
chr1 (310-362)||(35310304-35310356)
[»] chr6 (4 HSPs)
chr6 (310-364)||(8437824-8437878)
chr6 (302-364)||(35003757-35003819)
chr6 (311-364)||(9829898-9829951)
chr6 (300-344)||(7343311-7343355)
[»] chr2 (2 HSPs)
chr2 (302-362)||(2884254-2884314)
chr2 (305-363)||(15660702-15660760)
[»] chr4 (2 HSPs)
chr4 (309-364)||(24788641-24788696)
chr4 (309-364)||(24819564-24819619)
[»] chr3 (2 HSPs)
chr3 (181-244)||(53033604-53033667)
chr3 (308-364)||(31280159-31280215)
[»] chr7 (2 HSPs)
chr7 (306-364)||(30794443-30794501)
chr7 (301-353)||(27147594-27147646)
[»] chr5 (1 HSPs)
chr5 (308-362)||(30293380-30293434)
[»] chr8 (1 HSPs)
chr8 (308-348)||(44080741-44080781)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 25026729 - 25026342
Alignment:
Q  11 cagagactttcattgaaccaggaccatattagaggcttcgtacattattaatttattaataaaacataaga----------------ggatactcatgtg 94  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||                | |||||||||||    
T  25026729 cagagactttcattgaaccaagactatattagaggcttcatacattattaatttattaatgaaacataagaatgaaagaaagaaagagcatactcatgtg 25026630  T
Q  95 aagtaggatattatcatgtgaagtgggattcttaatttgtttaacacatgaagttggtactaaaatgtcttgttattttgaaacatcaggtggatatgga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026629 aagtaggatattatcatgtgaagtgggattcttaatttgtttaacacatgaagttggtactaaaatgtcttgttattttgaaacatcaggtggatatgga 25026530  T
Q  195 acccttgaagaattgctggaaattattacttgggctcaacttgggatccacagcaaaccggtaagaaccatactactcnnnnnnnaatttatttaaaaac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||    
T  25026529 acccttgaagaattgctggaaattattacttgggctcaacttgggatccacagcaaaccggtaagaaccatactatt---tttttaatttatttaaaaac 25026433  T
Q  295 tattttctccgtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgttgtaccaagtatatcaactta 385  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  25026432 tattttctccatcctaaaatacaagtaaaatttattctacaaaaattaatgtatctgattcaaaatttgttgtactaaatatatcaactta 25026342  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 30693332 - 30693395
Alignment:
Q  301 ctccgtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    |||||||| ||||||||| ||||| || ||| |||||||||||||||| ||||| |||||||||    
T  30693332 ctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgt 30693395  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 35310356 - 35310304
Alignment:
Q  310 aaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaattt 362  Q
    ||||||||||||||| ||  || |||||||||||||||| |||||||||||||    
T  35310356 aaaatataagtaaaaattggtcaacaaaaattaatgtatttgatttaaaattt 35310304  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 8437878 - 8437824
Alignment:
Q  310 aaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    ||||||||||||||||||| || |||||||||||||||| ||||| |||||||||    
T  8437878 aaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgt 8437824  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 35003757 - 35003819
Alignment:
Q  302 tccgtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    ||||||||||||||||||||||| ||  |  | |||||||||||||| ||||| |||||||||    
T  35003757 tccgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgt 35003819  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 9829898 - 9829951
Alignment:
Q  311 aaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    |||||||||||||| ||| || |||||||||||||||| |  ||||||||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgt 9829951  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 7343355 - 7343311
Alignment:
Q  300 tctccgtcctaaaatataagtaaaatttaatctacaaaaattaat 344  Q
    ||||||||||||||||||||||||| || ||| |||||| |||||    
T  7343355 tctccgtcctaaaatataagtaaaaattgatcaacaaaagttaat 7343311  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 2884254 - 2884314
Alignment:
Q  302 tccgtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaattt 362  Q
    ||||||||||||||||||||||| ||  || |||||||||||||||| || || |||||||    
T  2884254 tccgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaattt 2884314  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 15660760 - 15660702
Alignment:
Q  305 gtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttg 363  Q
    ||||||||||||||| |||| || ||| ||| |||||||||||| ||||| ||||||||    
T  15660760 gtcctaaaatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttg 15660702  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 24788641 - 24788696
Alignment:
Q  309 taaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    |||| ||||||||||| |||||| |||||||||||||||| | |||| ||||||||    
T  24788641 taaattataagtaaaaattaatcaacaaaaattaatgtatttaatttgaaatttgt 24788696  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 24819619 - 24819564
Alignment:
Q  309 taaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    |||| ||||||||||| |||||| |||||||||||||||| | |||| ||||||||    
T  24819619 taaattataagtaaaaattaatcaacaaaaattaatgtatttaatttgaaatttgt 24819564  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 53033604 - 53033667
Alignment:
Q  181 caggtggatatggaacccttgaagaattgctggaaattattacttgggctcaacttgggatcca 244  Q
    ||||||||||||| ||||| |||||| |  ||||||||||||| ||||||||||| || |||||    
T  53033604 caggtggatatggcaccctcgaagaacttttggaaattattacctgggctcaactaggtatcca 53033667  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 31280159 - 31280215
Alignment:
Q  308 ctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    ||||||||||||||||| || ||| |||||| ||||||||| || || |||||||||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgt 31280215  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 30794443 - 30794501
Alignment:
Q  306 tcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaatttgt 364  Q
    ||||||||||||||||||||||  || |||||| ||||| ||| ||||| |||||||||    
T  30794443 tcctaaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgt 30794501  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 27147594 - 27147646
Alignment:
Q  301 ctccgtcctaaaatataagtaaaatttaatctacaaaaattaatgtatctgat 353  Q
    |||||| ||||||||||||||||| ||| || |||||| ||||||||| ||||    
T  27147594 ctccgttctaaaatataagtaaaaattagtcaacaaaagttaatgtatttgat 27147646  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 30293380 - 30293434
Alignment:
Q  308 ctaaaatataagtaaaatttaatctacaaaaattaatgtatctgatttaaaattt 362  Q
    |||||||||||||||||||| ||| |||||| | ||||||| ||||| |||||||    
T  30293380 ctaaaatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaattt 30293434  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 44080781 - 44080741
Alignment:
Q  308 ctaaaatataagtaaaatttaatctacaaaaattaatgtat 348  Q
    ||||||||||||||||| || ||| ||||||||||||||||    
T  44080781 ctaaaatataagtaaaaattgatcaacaaaaattaatgtat 44080741  T

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