View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3543_low_7 (Length: 289)
Name: NF3543_low_7
Description: NF3543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3543_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 48797512 - 48797252
Alignment:
| Q |
18 |
gtttcttgctgtgaaaacacgtgcatctgcaacacaggtaatatagttaaattgagtgctacaatagaaatggaacagagggttgagacttgagaataac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48797512 |
gtttcttgctgtgaaaacacgtgcatctgcaacacaggtaatatagttaaattgagtgctacaatagaaatggaacagagggttgagacttgagaataac |
48797413 |
T |
|
| Q |
118 |
gggttacctcgaagagagacaggaagagaagcagaggattgagcttgagcaagtgccatggttgatgaagtaagttattgtaacagtcaaattgcaatcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48797412 |
gggttacctcgaagagagacaggaagagaagcagagggttgagcttgagcaagtgccatggttgatgaagtaagttattgtaacagtcaaattgcaatcc |
48797313 |
T |
|
| Q |
218 |
ttgttccttattatctctacctattcttttgagcaacggatgatgaaacatggccattcat |
278 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48797312 |
ttattccttattatctctacctattcttttgagcaacggatgatgaaacatggccattcat |
48797252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University