View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3544_high_1 (Length: 567)
Name: NF3544_high_1
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 26154062 - 26153654
Alignment:
| Q |
11 |
cagagacatgaatggtttaatttattttttgttgacaaacagatacatgaatagttgaatatgtatgtttaagtccacaaataaatattctgtnnnnnnn |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26154062 |
cagagacatgaatggtttaatttattttttgttgacaaacagatacatgaatagttgaatatgtatgtttaagtccacaaataaatattctgtcaaaaaa |
26153963 |
T |
|
| Q |
111 |
n-gtccaaaaataaatatagctaatgctaaaacaactttcggtcggttggcttattctatatacatattatttacaaaatactatgcttttcactaacat |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26153962 |
aagtccaaaaacaaatatagctaatgctaaaacaactttcggtcggttggcttattctatatacatattatttacaaaatactatgcttttcactaacat |
26153863 |
T |
|
| Q |
210 |
aattgtagttaggaaggttaggttctgattaatgcagataccattatatgaaatgtgcaaacttgtttaatccattattcaatgtatcnnnnnnnnnntt |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26153862 |
aattgtagttaggaaggttaggtcctgattaatgcagataccattatatgaaatgtgcaaacttgtttaatccattattcaatgtatcaaaaattgtttt |
26153763 |
T |
|
| Q |
310 |
tattaatccaaaaactagttgttattatttgtcaagagttattaatcatagtggaagtggacagcgactctaatgaatactccatatgtctcgaaatata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26153762 |
tattaatccaaaaactagttgttattatttgtcaagagttattaatcatagtggaagtggacagcgactctaatgaatactccatatgtctcgaaatata |
26153663 |
T |
|
| Q |
410 |
atatcattt |
418 |
Q |
| |
|
||||||||| |
|
|
| T |
26153662 |
atatcattt |
26153654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University