View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3544_high_13 (Length: 258)

Name: NF3544_high_13
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3544_high_13
NF3544_high_13
[»] chr4 (2 HSPs)
chr4 (31-251)||(31525357-31525577)
chr4 (30-147)||(23538177-23538294)
[»] chr3 (1 HSPs)
chr3 (31-251)||(33365925-33366145)
[»] chr1 (4 HSPs)
chr1 (31-251)||(49195313-49195533)
chr1 (30-153)||(46566568-46566691)
chr1 (31-153)||(12606589-12606711)
chr1 (31-174)||(40908316-40908458)
[»] chr5 (2 HSPs)
chr5 (30-153)||(43469558-43469681)
chr5 (28-153)||(12870152-12870277)
[»] chr7 (1 HSPs)
chr7 (30-153)||(10646061-10646184)
[»] chr2 (2 HSPs)
chr2 (30-174)||(3081202-3081345)
chr2 (30-99)||(10983161-10983229)
[»] chr6 (1 HSPs)
chr6 (31-139)||(27765318-27765420)
[»] scaffold0238 (1 HSPs)
scaffold0238 (30-116)||(5099-5185)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 31525577 - 31525357
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcaactgc 31525478  T
Q  131 caaccacacactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 230  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31525477 caaccacacactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 31525378  T
Q  231 gcatttatttcggccttggct 251  Q
    |||||||||||||||||||||    
T  31525377 gcatttatttcggccttggct 31525357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 23538294 - 23538177
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattg 129  Q
    ||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||  ||    
T  23538294 aatcctttattattaaagtcagacttgatgagctagcagtgttgccctaatcactcattatttttcctccctaatctgtaattaatgctaatctcatctg 23538195  T
Q  130 ccaaccacacactaaatc 147  Q
    |||||||||| |||||||    
T  23538194 ccaaccacaccctaaatc 23538177  T

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Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 33365925 - 33366145
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||    
T  33365925 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctataattaatgttaatctcaactgc 33366024  T
Q  131 caaccacacactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 230  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366025 caaccacacactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 33366124  T
Q  231 gcatttatttcggccttggct 251  Q
    |||||||||||||||||||||    
T  33366125 gcatttatttcggccttggct 33366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 49195533 - 49195313
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  49195533 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcatctgc 49195434  T
Q  131 caaccacacactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 230  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49195433 caaccacacactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagctt 49195334  T
Q  231 gcatttatttcggccttggct 251  Q
    |||||||||||||||||||||    
T  49195333 gcatttatttcggccttggct 49195313  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 46566568 - 46566691
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattg 129  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  |  ||||||||||| ||| ||||||||||| ||||||||  ||    
T  46566568 aatcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatttgtaattaatgctaatctcatctg 46566667  T
Q  130 ccaaccacacactaaatcccagcc 153  Q
    |||||||||  ||||||| |||||    
T  46566668 ccaaccacatcctaaatctcagcc 46566691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 12606711 - 12606589
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||| |||||||||||||||||||| || |||||||||||||||||||||| |  ||||||||||||||||  ||||||||| ||||| ||  |||    
T  12606711 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctccctaatccataattaatgctaatcccatctgc 12606612  T
Q  131 caaccacacactaaatcccagcc 153  Q
    ||||||||| ||||||| |||||    
T  12606611 caaccacaccctaaatctcagcc 12606589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 40908316 - 40908458
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||  | |  ||||||||||||||  || | |||||||||||||||  |||    
T  40908316 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacatgaatttaatgttaatctcatctgc 40908415  T
Q  131 caaccacacactaaatcccagccgttgttttatatgacctttca 174  Q
    |||||||||  |||||| ||||||||| |||  |||||||||||    
T  40908416 caaccacacgttaaatctcagccgttgcttt-catgacctttca 40908458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 43469681 - 43469558
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattg 129  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |  ||||||||||| |||| ||||||||||||||| |||  ||    
T  43469681 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgttaatttcatctg 43469582  T
Q  130 ccaaccacacactaaatcccagcc 153  Q
    |||||||||| ||||||| |||||    
T  43469581 ccaaccacaccctaaatctcagcc 43469558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 12870152 - 12870277
Alignment:
Q  28 agaatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaat 127  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||| |||  ||||     
T  12870152 agaatcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgtaattaatgctaacttcaac 12870251  T
Q  128 tgccaaccacacactaaatcccagcc 153  Q
      |||||||||| ||||||| |||||    
T  12870252 aaccaaccacaccctaaatctcagcc 12870277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 10646184 - 10646061
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattg 129  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |  ||||||||||| |||| |||||||||| ||||||||  ||    
T  10646184 aatcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgctaatctcatctg 10646085  T
Q  130 ccaaccacacactaaatcccagcc 153  Q
    |||||||||| ||||||| |||||    
T  10646084 ccaaccacaccctaaatctcagcc 10646061  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 3081202 - 3081345
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattg 129  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||  | |  ||||||||||||||   | | |||||||||||||||  ||    
T  3081202 aatcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacacgcatttaatgttaatctcatctg 3081301  T
Q  130 ccaaccacacactaaatcccagccgttgttttatatgacctttca 174  Q
    |||| |||||| |||||| ||||||||| |||  |||||||||||    
T  3081302 ccaatcacacattaaatctcagccgttgcttt-catgacctttca 3081345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 10983229 - 10983161
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctcc 99  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| || || ||||||||||    
T  10983229 aatcctttattataaaagccagacttgatgagctggcagt-ttgccctaatcaatcctgattttccctcc 10983161  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 27765318 - 27765420
Alignment:
Q  31 atcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatgttaatctcaattgc 130  Q
    |||||||||||| ||||| ||||||||||||| ||      |||||||||||||  |||||||||||||||||||  ||||||||| ||||||||| |||    
T  27765318 atcctttattattaaagctagacttgatgagctgg------tgccctaatcacttttgtttttccctccctaatccataattaatgctaatctcaactgc 27765411  T
Q  131 caaccacac 139  Q
    |||||||||    
T  27765412 caaccacac 27765420  T

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Target: scaffold0238 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 5099 - 5185
Alignment:
Q  30 aatcctttattataaaagccagacttgatgagcgggcagtgttgccctaatcactcatgtttttccctccctaatctgtaattaatg 116  Q
    ||||||||| ||||||||||||| |||||| || |||||||||| ||||||||||| |  |||| ||||| |||||  |||||||||    
T  5099 aatcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctccttaatccataattaatg 5185  T

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