View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_high_16 (Length: 242)
Name: NF3544_high_16
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 14984352 - 14984207
Alignment:
| Q |
47 |
ctgaagggaaatcatgataattaaaggcagcggaaattaaaattaaaaattttgatttctttttattgaattattacgaatttgatatgattagtgatga |
146 |
Q |
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| T |
14984352 |
ctgaagggaaatcatgataattaaaggcagcggaaattaaaaaaaaaa----tgatttcctttcctaggatcattacgaatttgacatgatcaatgatga |
14984257 |
T |
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| Q |
147 |
aattgttacctcttgaacggtagaaaatggatttcgatcatagcaaagcaa |
197 |
Q |
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| T |
14984256 |
aactgttacctcttgaagtgctgaaaa-ggatttcgatcacaacaaagcaa |
14984207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 37031460 - 37031570
Alignment:
| Q |
86 |
aaattaaaaattttgatttctttttattgaattattacgaatttgatatgattagtgatgaaattgttacctcttgaacggtagaaaatggatttcgatc |
185 |
Q |
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|||||||| |||||||||| ||| ||| || ||||||||||| | ||||| |||||| ||||||||||||||||| | |||||| | ||||||||| |
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| T |
37031460 |
aaattaaattttttgatttcctttccttggatcattacgaatttaacatgatcagtgatagaattgttacctcttgaagtgcagaaaa-gaatttcgatc |
37031558 |
T |
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| Q |
186 |
atagcaaagcaa |
197 |
Q |
| |
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| | |||||||| |
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| T |
37031559 |
acatcaaagcaa |
37031570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28717589 - 28717633
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaacatgagttgaaattcc |
47 |
Q |
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| T |
28717589 |
acaagttcctttgatcatctcatccaaaacatgagttgaaattcc |
28717633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28691386 - 28691430
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaacatgagttgaaattcc |
47 |
Q |
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| T |
28691386 |
acaagttcctttgatcatctcatccaaaacatgagctgaaattcc |
28691430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 28642183 - 28642216
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaacatga |
36 |
Q |
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| T |
28642183 |
acaagttcctttgatcatctcatccaaaacatga |
28642216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28674910 - 28674954
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaacatgagttgaaattcc |
47 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
28674910 |
acaagttcctttgatcatctcatccaaaatatgtgttggaattcc |
28674954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 28651044 - 28651077
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaacatga |
36 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
28651044 |
acaagttcctttgatcatctcatgcaaaacatga |
28651077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 28696271 - 28696299
Alignment:
| Q |
3 |
acaagttcctttgatcatctcatccaaaa |
31 |
Q |
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| T |
28696271 |
acaagttcctttgatcatctcatccaaaa |
28696299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 5523959 - 5524096
Alignment:
| Q |
86 |
aaattaaaaattttgatttctttttattgaattattacgaatttgatatgattagtgatgaaattgttacctcttgaacggtagaaaatggatttcgatc |
185 |
Q |
| |
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||||||||| ||| |||||| |||| ||| || ||||||||||||| ||||| |||||| ||||||||||||||||| |||||| | |||| |||| |
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| T |
5523959 |
aaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagtgatagaattgttacctcttgaagtacagaaaa-gaattttgatc |
5524057 |
T |
|
| Q |
186 |
atagcaaagcaaaatattagtgcctctactcgttcacac |
224 |
Q |
| |
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| T |
5524058 |
acagcaaagcaacatagtaaagtctctactcgtccacac |
5524096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 25844709 - 25844819
Alignment:
| Q |
86 |
aaattaaaaattttgatttctttttattgaattattacgaatttgatatgattagtgatgaaattgttacctcttgaacggtagaaaatggatttcgatc |
185 |
Q |
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|||||||| ||||||| || ||| ||| || ||||||||||||| ||||| |||||| ||||||||||||| ||| ||||||| ||||||||||| |
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| T |
25844709 |
aaattaaattttttgatctcctttccttggatcattacgaatttgacatgatcagtgatagaattgttacctctcgaagtatagaaaa-ggatttcgatc |
25844807 |
T |
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| Q |
186 |
atagcaaagcaa |
197 |
Q |
| |
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| | |||||||| |
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|
| T |
25844808 |
acaacaaagcaa |
25844819 |
T |
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