View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_high_2 (Length: 361)
Name: NF3544_high_2
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7953668 - 7954029
Alignment:
| Q |
1 |
ttgatattgttatctgtgctgctggtagactactaattgaagatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgacaaaatt |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7953668 |
ttgatattgtgatttgtgctgctggtagactactaattgaggatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgagcaaatt |
7953767 |
T |
|
| Q |
101 |
tgtcactgtgctcg--tacataagttcaaataagtcaattcagatagactctta-gtaatacatcctttgatggttagatttgtgctcgttatattgaat |
197 |
Q |
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||||||| | || |||||||||||||||||||| | ||| ||| ||| |||||| ||||||| ||||||||||| ||| |||||||||||| |
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| T |
7953768 |
tgtcactacaccacactaaataagttcaaataagtcaatctaaataaactattaagtaatagctcctttgctggttagatttcggcttgttatattgaat |
7953867 |
T |
|
| Q |
198 |
attggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagttttt |
297 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953868 |
gttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagttttt |
7953967 |
T |
|
| Q |
298 |
gaagaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacacttacctttg |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7953968 |
gaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacacttacctttg |
7954029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7966548 - 7966909
Alignment:
| Q |
1 |
ttgatattgttatctgtgctgctggtagactactaattgaagatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgacaaaatt |
100 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7966548 |
ttgatattgtgatttgtgctgctggtagactactaattgaggatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgagcaaatt |
7966647 |
T |
|
| Q |
101 |
tgtcactgtgctcg--tacataagttcaaataagtcaattcagatagactctta-gtaatacatcctttgatggttagatttgtgctcgttatattgaat |
197 |
Q |
| |
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||||||| | || |||||||||||||||||||| | ||| ||| ||| |||||| ||||||| ||||||||||| ||| |||||||||||| |
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| T |
7966648 |
tgtcactacaccacactaaataagttcaaataagtcaatctaaataaactattaagtaatagctcctttgctggttagatttcggcttgttatattgaat |
7966747 |
T |
|
| Q |
198 |
attggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagttttt |
297 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966748 |
gttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagttttt |
7966847 |
T |
|
| Q |
298 |
gaagaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacacttacctttg |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7966848 |
gaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacacttacctttg |
7966909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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