View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_high_3 (Length: 349)
Name: NF3544_high_3
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 39128899 - 39128563
Alignment:
| Q |
1 |
caaacaataaacaccaagaaaatagacatttaaaaatctaatcaggaaaaacaaagttaagtgaaaacagaatccaccgctctaacaacatatatacatt |
100 |
Q |
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| T |
39128899 |
caaacgataaacaccaagaaaatagacatttaaaaatctaatcaggaaaaacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatacatt |
39128800 |
T |
|
| Q |
101 |
gccaacagataaaagaaaataagaataaacataaacacctagtagtaa----caatgttgataagtttatttggtggtttcaaattgaacatagttgaaa |
196 |
Q |
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| T |
39128799 |
gccaacagataaaagaaaataagaataaacataaacacctggtagtaagtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaa |
39128700 |
T |
|
| Q |
197 |
caagcaaaacccttaaaatcaatttctcaactatggcattcactcggaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatgaaacataa |
296 |
Q |
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| T |
39128699 |
caagcaaaacccttaaaatcaatttctcaactatggcattcactcagaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatcaaacataa |
39128600 |
T |
|
| Q |
297 |
acacagtgatactattgtgttgacacaaagcataaac |
333 |
Q |
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| T |
39128599 |
acacagtgatactattgtgttgacacaaagcataaac |
39128563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 39128493 - 39128444
Alignment:
| Q |
283 |
aaaatgaaacataaacacagtgatactattgtgttgacacaaagcataaa |
332 |
Q |
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| T |
39128493 |
aaaatcaaacataaacaaagtgatactattgtattgacacagagcataaa |
39128444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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