View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_high_5 (Length: 331)
Name: NF3544_high_5
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 38893994 - 38893677
Alignment:
| Q |
1 |
agtttcacgttgaaatattgatttactaaatcaaaatagaaatttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctag |
100 |
Q |
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| T |
38893994 |
agtttcacgttgaaatattgatttactaaatcaaaatagaaatttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctag |
38893895 |
T |
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| Q |
101 |
aggaagattgtaaagttgttaaaaaactattgaagggctgaaattaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38893894 |
aggaagattgtaaagttgttaaaaaactattgaagggctgaaattaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagctg |
38893795 |
T |
|
| Q |
201 |
tttcctttaaaaagtactttaannnnnnnnataaagggaaggggggtttatggagttgtgggggaaaaggatatataggacaccgcttttggactccatt |
300 |
Q |
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| T |
38893794 |
tttcctttaaaaaatgctttaattttttttataaagggaagggggttttatggagttgtgggggaaaaggatatataggacaccgcttttggactccatt |
38893695 |
T |
|
| Q |
301 |
attgctcaagttcatctc |
318 |
Q |
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|||||||||||||||||| |
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| T |
38893694 |
attgctcaagttcatctc |
38893677 |
T |
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