View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_high_9 (Length: 280)
Name: NF3544_high_9
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 13214072 - 13213801
Alignment:
| Q |
7 |
ctgaaatgaaggtgcatatagctgagagaaagaggcagtagtaaagaccaaggtttaagaattaagatagtgagtaaggttttttaccctattagtgaaa |
106 |
Q |
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| T |
13214072 |
ctgaaaagaaggtgcatatagctgagagaaagaggcagtagtaaagaccaaggtttaagaattaagatagtgagtaaggttttttaccctattagtgtaa |
13213973 |
T |
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| Q |
107 |
gacatatattaatgtgttcttatttgcagcttttccaatatagaagaagaaacttacacatacacaaacatttacaaagacactagttataag-gagaga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13213972 |
gacatatattaatgtgttcttatttgcagcttttccaatatagaagaagaaacttacacatacacaaacatttacaaagacactagttataagagagaga |
13213873 |
T |
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| Q |
206 |
gaaatttcaagcatggtagtagtcttgaataaatgggacccactttgtaggtcccacaacaccgcccatgcgcac |
280 |
Q |
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| T |
13213872 |
gaaatttcaagcatggtagta---ttgaatatatgggacccactttgtaggtcccacaacaccgcccatgcgcac |
13213801 |
T |
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