View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_10 (Length: 273)
Name: NF3544_low_10
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_10 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 17872102 - 17872357
Alignment:
| Q |
18 |
tgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttcttttcatcttttgcag |
117 |
Q |
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| T |
17872102 |
tgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttcttttcatcttttgcag |
17872201 |
T |
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| Q |
118 |
gtccaacagaaattaattcagcatgacaccacttccttagtttgcttactacatgtactggatctgtgtctccagttaaggttaatttcttgtctttcat |
217 |
Q |
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| T |
17872202 |
gtccaacagaaactatttcagcattacaccacttcctaagtttgcttactacatgtactggatctgtgtctccagttaaggttaatttcttgtctttcat |
17872301 |
T |
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| Q |
218 |
gtccacagaaactgactctacccctacaaataatataccaatacaattttagcaaa |
273 |
Q |
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| T |
17872302 |
gtccacagaaactgattctacccctgcaaataatataccaatacaattttagcaaa |
17872357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 17861500 - 17861751
Alignment:
| Q |
18 |
tgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttcttttcatcttttgcag |
117 |
Q |
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| T |
17861500 |
tgttgcatgtaataataatgaggataggcttcaagtaattgaatttggtccttcttcacatcaggcttaggttcttctttcttcttttcatcttttgcag |
17861599 |
T |
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| Q |
118 |
gtccaacagaaattaattcagcatgacaccacttccttagtttgcttactacatgtactggatctgtgtctccagttaaggttaatttcttgtctttcat |
217 |
Q |
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| T |
17861600 |
gtccaacagaaactatttcagcatgacaccacttcctaagtttgcttagtacatgtactggatctgtgtctccagttaaggttaatttcttgtctttcat |
17861699 |
T |
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| Q |
218 |
gtccacagaaactgactctacccctacaaataatataccaatacaattttag |
269 |
Q |
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| T |
17861700 |
gtccacagaaactgattctacccctgcaaataatatagcaatacgattttag |
17861751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 17861798 - 17861874
Alignment:
| Q |
193 |
ttaaggttaatttcttgtctttcatgtccacagaaactgactctacccctacaaataatataccaatacaattttag |
269 |
Q |
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| T |
17861798 |
ttaaggttaatttcttgtctttcatgtccacagaaactgattctacccctgcaaataatatagcaatacgattttag |
17861874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 17861921 - 17861952
Alignment:
| Q |
193 |
ttaaggttaatttcttgtctttcatgtccaca |
224 |
Q |
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| T |
17861921 |
ttaaggttaatttcttgtctttcatgtccaca |
17861952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 45041166 - 45041321
Alignment:
| Q |
84 |
ttaggttcttctttcttcttttcatcttttgcaggtccaacagaaattaattcagcatgacaccacttccttagtttgcttactacatgtactggatctg |
183 |
Q |
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| T |
45041166 |
ttaggttcttctttctt---ttcctctttagctggtccaactgaaagtatttcagcataacaaatcttccttagcttagccactacacgtactggatcaa |
45041262 |
T |
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| Q |
184 |
tgtctccagttaaggttaatttcttgtctttcatgtccacagaaactgactctacccct |
242 |
Q |
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| T |
45041263 |
tatctcctattaaggtcattttcttgtctttcatgtctattgaaactgactcaacccct |
45041321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 45009387 - 45009450
Alignment:
| Q |
184 |
tgtctccagttaaggttaatttcttgtctttcatgtccacagaaactgactctacccctacaaa |
247 |
Q |
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| T |
45009387 |
tgtctcctgttaaggtcaatttctggtccttcatatccaaagaaactgactcaacccctgcaaa |
45009450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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