View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_12 (Length: 266)
Name: NF3544_low_12
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 37783359 - 37783101
Alignment:
| Q |
13 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
112 |
Q |
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| T |
37783359 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
37783260 |
T |
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| Q |
113 |
tcactaatccagaggctacaattccctgcagtaacattcacttgcatttaacaactacattcgaacctttaatttaacacat-----atatatatgaagg |
207 |
Q |
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| T |
37783259 |
tcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaactacattcgaacctttaatataacacatatatgatatatatgaagg |
37783160 |
T |
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| Q |
208 |
gagtaaaattcttgtaaattccactaaatttacttgtgtcccagtctaaagtagatttt |
266 |
Q |
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| T |
37783159 |
gagtaaaattcttgtaaattccactaaatttacgtgtgtcccagtctaaagtagatttt |
37783101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 37808598 - 37808448
Alignment:
| Q |
18 |
ataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcact |
117 |
Q |
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| T |
37808598 |
ataggcaaagacagctacaagtaaaagctgaagaggattgaaaacagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccact |
37808499 |
T |
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| Q |
118 |
aatccagaggctacaattccctgcagtaacattcacttgcatttaacaact |
168 |
Q |
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| T |
37808498 |
gacccagagaccacaataccctgcattaacattcacatacatttaacaact |
37808448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 37803885 - 37803798
Alignment:
| Q |
22 |
gcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaa |
109 |
Q |
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| T |
37803885 |
gcagagacagccacaagtaaaagttgaagaggatagaaaacagaggcaaagagagggcctctcatctttatgcaccaagcaataacaa |
37803798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 37792503 - 37792398
Alignment:
| Q |
34 |
acaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
133 |
Q |
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| T |
37792503 |
acaagtaggagttgaagaggatagaaaacagaggcaaaaagagggcctctcatctttatgcaccaggcaataacaatagtagttattccagaggctacaa |
37792404 |
T |
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| Q |
134 |
ttccct |
139 |
Q |
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|||||| |
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| T |
37792403 |
ttccct |
37792398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 1213982 - 1214066
Alignment:
| Q |
49 |
agaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
133 |
Q |
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| T |
1213982 |
agagggttgaagacagatgcaaataaaggtcccctcatctttatgcaccacgaagtcacaataaccactaatccagaggcaacaa |
1214066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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