View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_13 (Length: 263)
Name: NF3544_low_13
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 29023459 - 29023716
Alignment:
| Q |
6 |
aattgccaaatttcatttccagtttcagaatcaataagaacgtgacgtagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca |
105 |
Q |
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| T |
29023459 |
aattgccaaatttcatttccagtttcagaatcaataagaacgtgacatagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca |
29023558 |
T |
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| Q |
106 |
ataatacacataacataacacagat--------------taaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca |
191 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29023559 |
ataatacacataacataacacatataacacatataagactaaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca |
29023658 |
T |
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| Q |
192 |
ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29023659 |
ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccat |
29023716 |
T |
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