View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_21 (Length: 212)
Name: NF3544_low_21
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 13213553 - 13213480
Alignment:
| Q |
122 |
ctccaaaccttgaactaccatctctttactttacttccataaaaataaaagtagcttagctagctagtttcatat |
196 |
Q |
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| T |
13213553 |
ctccaaaccttgaactaccatctctttactttacttccataaaaa-aaaagtagcttagctagctagtttcatat |
13213480 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13213672 - 13213622
Alignment:
| Q |
1 |
atcctcaatctcattattattaaaccgcataaacaaaagcttcctaagttg |
51 |
Q |
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| T |
13213672 |
atcctcaatctcattattattaaaccgcataaacaaaagcttcctaagttg |
13213622 |
T |
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