View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_4 (Length: 347)
Name: NF3544_low_4
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7953357 - 7953687
Alignment:
| Q |
1 |
accaacaggagctattggaagacacatagtttgggcaagtattaaagcaggaaatccaacatatgctttggttagaaaaacacctggcaatgttaacaag |
100 |
Q |
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| T |
7953357 |
accaacaggagctattggaagacacatagtttgggcaagtattaaagcaggaaatccaacatatgctttggttagaaaaacacctggcaatgttaacaag |
7953456 |
T |
|
| Q |
101 |
ccaaagcttattacagctgctaatcctgaaaccaaggaagagcttattgataattaccaatctttaggagttattctacttgaagtaagtgattttaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7953457 |
ccaaagcttattacagctgctaatcctgaaaccaaggaagagcttattgataattaccaatctttaggagttattctacttgaagtaagtgatttcaatt |
7953556 |
T |
|
| Q |
201 |
tgtgaaataattttatattttatactaattaaatttttctaatcaatatgtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggc |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953557 |
tctgaaataattttatattttatactaattaaatttttctaatcaatatgtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggc |
7953656 |
T |
|
| Q |
301 |
aatcaagcaagttgatattgttatctgtgct |
331 |
Q |
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| T |
7953657 |
aatcaagcaagttgatattgtgatttgtgct |
7953687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7966237 - 7966567
Alignment:
| Q |
1 |
accaacaggagctattggaagacacatagtttgggcaagtattaaagcaggaaatccaacatatgctttggttagaaaaacacctggcaatgttaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966237 |
accaacaggagctattggaagacacatagtttgggcaagtattaaagcaggaaatccaacatatgctttggttagaaaaacacctggcaatgttaacaag |
7966336 |
T |
|
| Q |
101 |
ccaaagcttattacagctgctaatcctgaaaccaaggaagagcttattgataattaccaatctttaggagttattctacttgaagtaagtgattttaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
7966337 |
ccaaagcttattacagctgctaatcctgaaaccaaggaagagcttattgataattaccaatctttaggagttattctacttgaagtaagtgatttcaatt |
7966436 |
T |
|
| Q |
201 |
tgtgaaataattttatattttatactaattaaatttttctaatcaatatgtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggc |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966437 |
tctgaaataattttatattttatactaattaaatttttctaatcaatatgtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggc |
7966536 |
T |
|
| Q |
301 |
aatcaagcaagttgatattgttatctgtgct |
331 |
Q |
| |
|
||||||||||||||||||||| || |||||| |
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|
| T |
7966537 |
aatcaagcaagttgatattgtgatttgtgct |
7966567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 7942370 - 7942409
Alignment:
| Q |
277 |
tgatcatgaaactcttgttaaggcaatcaagcaagttgat |
316 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
7942370 |
tgatcatgaaagtcttgttaaggcaattaagcaagttgat |
7942409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 52525818 - 52525970
Alignment:
| Q |
8 |
ggagctattggaagacacatagtttgggcaagtattaaagcaggaaatccaacatatgctttggttagaaaaacacctggcaatgttaacaagccaaagc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
52525818 |
ggagctattggaagacacatagtttgggcaagtattaaagcaggaaatctaacatctgctttggttagaaaaacacctggccatgttaacaaaccaaagc |
52525917 |
T |
|
| Q |
108 |
ttattacagctgctaatcctgaaaccaaggaagagcttattgataattaccaa |
160 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
52525918 |
ttattacagctaataatcctgaaaccaaggaagagcttattgagaattaccaa |
52525970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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