View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_6 (Length: 320)
Name: NF3544_low_6
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 37782607 - 37782910
Alignment:
| Q |
17 |
catgaccaatattgttgtcgtttagaaagataaatgatgattttaattaattaaaaagataaagaaactttttatatcctaaattagttgagggatctct |
116 |
Q |
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| T |
37782607 |
catgaccaatattgttgtcgtttagaaagataaatgatgattttaattaattaaagagataaagaaactttttatatcctaaattagttgagggatctct |
37782706 |
T |
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| Q |
117 |
aatgcaactttgccttttacatatcattgtgtttatatgaatatatgatatatgagttgttttgcatgttatggtccattaactttacatgactcaggct |
216 |
Q |
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| T |
37782707 |
aatgcaacattgccttttacatatcattgtgtttatatgaatatatgatatatgagttgttttgcatgttatggtccattaagtttatatgactcaggct |
37782806 |
T |
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| Q |
217 |
aaattgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagag |
316 |
Q |
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| T |
37782807 |
aagttgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagag |
37782906 |
T |
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| Q |
317 |
attg |
320 |
Q |
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|||| |
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| T |
37782907 |
attg |
37782910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 37808178 - 37808287
Alignment:
| Q |
211 |
caggctaaattgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcg |
310 |
Q |
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| T |
37808178 |
caggctaagttgaatgaagaatatccattccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcg |
37808277 |
T |
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| Q |
311 |
atagagattg |
320 |
Q |
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| T |
37808278 |
atagggattg |
37808287 |
T |
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