View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3544_low_7 (Length: 312)
Name: NF3544_low_7
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3544_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 49911016 - 49910713
Alignment:
| Q |
2 |
ccaaagttgaatgcaatgttattctcatcctcctctcccatttccaaaacaacnnnnnnngatatactaatactacttgtacaagactatactcatggat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49911016 |
ccaaagttgaatgcaatgttattctcatcctcctctcccatttccaaaacaacaaaaaaagatatactaatactacttgtacaagactatactcatggat |
49910917 |
T |
|
| Q |
102 |
tgatatatcatgaggagataattaaacatgcagccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgc----nnnnnnnnnnnn |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910916 |
tgatatatcatgaggagataattaaacatgcaaccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgctatatatatatatata |
49910817 |
T |
|
| Q |
198 |
ngctactctgttgttgaatgaa--------ttgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaaccca |
289 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910816 |
tgcta--ctgttgttgaatgaatgaatgaattgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaaccca |
49910719 |
T |
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| Q |
290 |
ctcact |
295 |
Q |
| |
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|||||| |
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| T |
49910718 |
ctcact |
49910713 |
T |
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