View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3544_low_8 (Length: 299)

Name: NF3544_low_8
Description: NF3544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3544_low_8
NF3544_low_8
[»] chr7 (8 HSPs)
chr7 (11-201)||(1302434-1302627)
chr7 (11-214)||(8660367-8660574)
chr7 (11-99)||(8647824-8647912)
chr7 (11-89)||(7876735-7876813)
chr7 (12-89)||(3148495-3148572)
chr7 (17-105)||(8630357-8630445)
chr7 (11-87)||(8668588-8668664)
chr7 (11-67)||(8655472-8655528)
[»] chr1 (2 HSPs)
chr1 (11-106)||(4677424-4677519)
chr1 (36-90)||(34465148-34465202)
[»] chr2 (1 HSPs)
chr2 (11-89)||(16656501-16656579)
[»] chr5 (1 HSPs)
chr5 (11-64)||(42554113-42554166)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 1302434 - 1302627
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctg---- 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  1302434 cacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctgaaag 1302533  T
Q  107 -nnnnnnnnnnnctcagtcaaaatttgtagcaacttaattttaaaacaatagtcttttttgtgtttccgaaaactcaatcatctacgtttataata 201  Q
                ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1302534 aaagaaaaaaaactca--caaaatttgtagcaacttaattttaaaacaatagtcttttttgtgtttccgaaaactcaagcatctacgtttataata 1302627  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 8660367 - 8660574
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctg--nn 108  Q
    ||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||        
T  8660367 cacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttcgtactttatccccatgatcgttcaaataatcaaaagaagctgaaaa 8660466  T
Q  109 nnnnnnnnnctc-agtcaaaatttgtagcaacttaattttaaaacaatagtcttttttgtgtttccgaaaactcaatcatctacgtttat-aatactaac 206  Q
             ||| | |||||||||| |||||| ||||||| ||||| ||||  |||||||||||||||||| |||| |||||| |||| | |||||||||    
T  8660467 aacttaaaactcaattcaaaatttgcagcaacctaattttgaaacagtagttctttttgtgtttccgaaaagtcaaacatctaagtttgtaaatactaac 8660566  T
Q  207 cttggttt 214  Q
    ||||||||    
T  8660567 cttggttt 8660574  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 8647824 - 8647912
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaa 99  Q
    ||||| |||||||||||| || ||||||||||||||||| || ||| |||||||||  ||| ||||||||||||||||| ||| |||||    
T  8647824 cacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgttttttcgccatgatctttcaagtaaacaaaa 8647912  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7876813 - 7876735
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaa 89  Q
    ||||| |||||| ||||| || ||||||||||||||||| || |||||||||||||| ||| ||||||| |||||||||    
T  7876813 cacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatctttcaa 7876735  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 3148495 - 3148572
Alignment:
Q  12 acagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaa 89  Q
    |||| ||| |||||||| || ||||||||||| ||||| || |||| ||||||||||||| | ||||||| |||||||    
T  3148495 acagcaacgcacgaatacgttgttccaaggtcgattcccactgcacatccttcgtacttttttgccatgacctttcaa 3148572  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 8630357 - 8630445
Alignment:
Q  17 aacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagct 105  Q
    |||||| ||||| || ||||||||||||||||| |||||| |||| ||||  ||| | ||||||||| ||||| ||| |||| ||||||    
T  8630357 aacacaagaataggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaacaaaggaagct 8630445  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 8668588 - 8668664
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttc 87  Q
    ||||| |||||| ||||| || |||||||| |||||||| || |||||||||||||| | | | |||||||||||||    
T  8668588 cacagcaacacatgaataggttgttccaagatctattcccactgcacgtccttcgtattcttttgccatgatctttc 8668664  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8655472 - 8655528
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgta 67  Q
    ||||| |||||| ||||| || ||||| ||||||||||| ||||||||||| |||||    
T  8655472 cacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgta 8655528  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 4677519 - 4677424
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctg 106  Q
    ||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  4677519 cacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctg 4677424  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 34465202 - 34465148
Alignment:
Q  36 ccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaa 90  Q
    |||||||||||||| ||||||||||||||  | ||| ||||||||||||||||||    
T  34465202 ccaaggtctattcccacagcacgtccttcacattttttcgccatgatctttcaaa 34465148  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 16656579 - 16656501
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaa 89  Q
    ||||| |||||| |||||||| ||||||||||||||||| || ||||||||||| |  ||| | ||||| |||||||||    
T  16656579 cacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaa 16656501  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 42554166 - 42554113
Alignment:
Q  11 cacagaaacacacgaataagtagttccaaggtctattccaacagcacgtccttc 64  Q
    ||||| |||||||||||| || ||||||||||||||||| || |||||||||||    
T  42554166 cacagtaacacacgaatacgttgttccaaggtctattcccactgcacgtccttc 42554113  T

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