View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3545_high_1 (Length: 1102)
Name: NF3545_high_1
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3545_high_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 619 - 1102
Target Start/End: Complemental strand, 37385914 - 37385424
Alignment:
| Q |
619 |
ccacttgctcaaagtgtccgagagtctctc----actgcttagatcgatcaaccagatattttcggtttttcaaagcagtatttattccatcacaagttc |
714 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37385914 |
ccacttgctcaaagtgtccgagagtctctctctcactgctgagatcgatcaaccagatattttcggtttttcaaagcagtatttattccatcacaagttc |
37385815 |
T |
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| Q |
715 |
acaactcaagtcacattagagttagttactacacatgacaatgaaaggaggacagagaaagaaccttctatacacaaaca---ttctgtgcttccttttg |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
37385814 |
acaactcaagtcacattagagttagttactacacatgacaatgaaaggaggacagagaaagaaccttctatacacaaacaatattctgtgcatccttttg |
37385715 |
T |
|
| Q |
812 |
cttcaatggcttgatctctccttagtaaagagtgctaaggttccggcgatcatagtgttcggcgactcatccgtggatgccgggaacaacaacttcatat |
911 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37385714 |
cttcaatggcttgatctctccttagtaaagagtgctaaggttccggcgatcatagtgttcggcgactcatccgtggatgccgggaacaacaacttcatat |
37385615 |
T |
|
| Q |
912 |
cgacggttgctcggagcaatttccagccgtatggacgtgattttctgggtgggaagccaactgggagattcagcaatggtagaatagcgactgatttcat |
1011 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37385614 |
cgacggttgctcggagcaatttccagccgtatggacgtgattttctgggtgggaagccaactgggagattcagcaatggtagaatagcaactgatttcat |
37385515 |
T |
|
| Q |
1012 |
atcagaagcatttggtatcaaaccatacataccggcatacttggaccctagctttaacatctcacagtttgcaactggtgtctcctttgct |
1102 |
Q |
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| T |
37385514 |
atcagaagcatttggtatcaaaccatacataccagcatacttggaccctagctttaacatctcacagtttgcaactggtgtctcctttgct |
37385424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 37386465 - 37386007
Alignment:
| Q |
17 |
acttttaagttgtatcaattgtttagaagacttttatacttctcatttaatggttattagagatgtatttaatgtttcacagttttttatagggacgtat |
116 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |
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| T |
37386465 |
acttctaagttgtattaattgtttagaagacttttatacttttcatttaatggttattagggatgtatttaatatttcacagttttttatagagacgtat |
37386366 |
T |
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| Q |
117 |
ttgtaaaaatatttaaaaaattgcaacaatatatat--gaatgttttctgttttccttcttaataaagataggagagagtattcacaaccgtttaacaat |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| | |||||||||||||| |
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| T |
37386365 |
ttataaaaatatttaaaaaattgcaacaatatatatatgaatgttttctgtttttcttcttaataaagacatgagagagtatttataaccgtttaacaat |
37386266 |
T |
|
| Q |
215 |
gattagtctatcaaagagttgttgagcatgaaaagtaaccataaa-tattttgttgacacattttttctaaacctacaccttatactactgattttgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||| |||||||| |
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| T |
37386265 |
gattagtctatcaaagagttgttgagcatgaaaagtaatcataaaatattttgttgacacatttttcctaaatctacaccatatactactgtttttgtat |
37386166 |
T |
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| Q |
314 |
taagtgtttctccaccttgaaatccgactaacactaaatatgagggtactatataaagtgttggaattgtgtgtccaaatatcattgttaggacaaatta |
413 |
Q |
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||| ||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
37386165 |
taattgtttctccgcctcgaaatccgactaatactaaatctgagggtactatataaagtgttggatttgtgtgtccaaatataattgttaggacaaatta |
37386066 |
T |
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| Q |
414 |
tttattctcaactatatatacaaaacacaagtcaaatttaaagagaaaatatatttgaa |
472 |
Q |
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| T |
37386065 |
tttattctcaactatatatgcaaaacacaagtcaaatttaaagagaaaatatatttgaa |
37386007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 40344982 - 40344921
Alignment:
| Q |
81 |
gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaa |
142 |
Q |
| |
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|||||||||| |||||| ||||||||| || |||||||||||||||| ||||| |||||| |
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| T |
40344982 |
gtatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaa |
40344921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 842 - 956
Target Start/End: Original strand, 36599013 - 36599127
Alignment:
| Q |
842 |
agtgctaaggttccggcgatcatagtgttcggcgactcatccgtggatgccgggaacaacaacttcatatcgacggttgctcggagcaatttccagccgt |
941 |
Q |
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||||| ||||||||||| || || |||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
36599013 |
agtgcaaaggttccggcaataatcgtgttcggagactcttccgttgatgccgggaataacaacttcattccgacggttgcacggagcaattttcagccgt |
36599112 |
T |
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| Q |
942 |
atggacgtgattttc |
956 |
Q |
| |
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|||||||||| |||| |
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| T |
36599113 |
atggacgtgactttc |
36599127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 30615210 - 30615279
Alignment:
| Q |
77 |
agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat |
146 |
Q |
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| T |
30615210 |
agatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaacaat |
30615279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 28165179 - 28165118
Alignment:
| Q |
77 |
agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaatt |
138 |
Q |
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||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||||| |
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| T |
28165179 |
agatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaatt |
28165118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 20949169 - 20949224
Alignment:
| Q |
80 |
tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa |
135 |
Q |
| |
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|||||||||||||||||| |||||||| || |||||||||||||||||||||| |
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| T |
20949169 |
tgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaa |
20949224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19285976 - 19286043
Alignment:
| Q |
79 |
atgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat |
146 |
Q |
| |
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|||||||||||| |||||| ||| |||||||| ||||||||||| |||||||||| ||| |||||| |
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| T |
19285976 |
atgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaat |
19286043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 38214210 - 38214265
Alignment:
| Q |
80 |
tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa |
135 |
Q |
| |
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|||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| |
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| T |
38214210 |
tgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa |
38214265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 2520183 - 2520129
Alignment:
| Q |
81 |
gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa |
135 |
Q |
| |
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||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| |
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| T |
2520183 |
gtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa |
2520129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 40314309 - 40314366
Alignment:
| Q |
77 |
agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaa |
134 |
Q |
| |
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||||||||||||||||||| | |||||||| || ||||||||||||||||||||| |
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| T |
40314309 |
agatgtatttaatgtttcataattttttatgaagatatatttgtaaaaatatttaaaa |
40314366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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