View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3545_high_19 (Length: 451)

Name: NF3545_high_19
Description: NF3545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3545_high_19
NF3545_high_19
[»] chr4 (20 HSPs)
chr4 (191-440)||(53752245-53752511)
chr4 (185-348)||(53753351-53753515)
chr4 (221-360)||(13231278-13231418)
chr4 (90-177)||(36801526-36801613)
chr4 (96-177)||(18735557-18735639)
chr4 (96-176)||(18669282-18669363)
chr4 (96-176)||(18708052-18708133)
chr4 (96-176)||(18715298-18715379)
chr4 (90-169)||(5734702-5734781)
chr4 (96-175)||(7777198-7777277)
chr4 (185-256)||(35602467-35602538)
chr4 (96-177)||(9045752-9045833)
chr4 (185-292)||(12691678-12691786)
chr4 (185-278)||(3232518-3232612)
chr4 (185-255)||(10128709-10128779)
chr4 (100-177)||(10394241-10394318)
chr4 (220-309)||(12691444-12691534)
chr4 (180-249)||(489374-489443)
chr4 (180-249)||(515166-515235)
chr4 (185-309)||(47980688-47980813)
[»] chr1 (13 HSPs)
chr1 (185-333)||(28533780-28533929)
chr1 (185-309)||(6056379-6056504)
chr1 (103-177)||(9246564-9246638)
chr1 (112-176)||(21852369-21852433)
chr1 (90-175)||(45040291-45040378)
chr1 (180-302)||(2953727-2953850)
chr1 (187-299)||(5926524-5926637)
chr1 (185-309)||(25415100-25415225)
chr1 (184-292)||(49002878-49002987)
chr1 (185-292)||(2953467-2953575)
chr1 (137-177)||(25030629-25030669)
chr1 (196-304)||(33347677-33347786)
chr1 (185-249)||(46364577-46364641)
[»] chr7 (12 HSPs)
chr7 (185-343)||(39527019-39527178)
chr7 (96-173)||(16649252-16649329)
chr7 (96-173)||(17623613-17623690)
chr7 (94-177)||(22493703-22493786)
chr7 (90-177)||(20389065-20389152)
chr7 (111-177)||(30781378-30781444)
chr7 (185-283)||(39525679-39525778)
chr7 (185-293)||(3226071-3226180)
chr7 (96-177)||(6961465-6961543)
chr7 (185-256)||(47733023-47733094)
chr7 (185-256)||(47739023-47739094)
chr7 (180-236)||(47082038-47082094)
[»] chr8 (17 HSPs)
chr8 (185-348)||(43073566-43073730)
chr8 (361-440)||(43074486-43074567)
chr8 (14-80)||(43074736-43074802)
chr8 (184-231)||(43074595-43074642)
chr8 (96-177)||(8995388-8995469)
chr8 (104-177)||(36109191-36109264)
chr8 (90-172)||(25382504-25382588)
chr8 (220-348)||(36574855-36574984)
chr8 (185-256)||(41767616-41767687)
chr8 (185-256)||(41773640-41773711)
chr8 (196-309)||(547691-547805)
chr8 (96-177)||(11636165-11636246)
chr8 (104-177)||(17836853-17836927)
chr8 (262-311)||(27856823-27856872)
chr8 (96-149)||(32017642-32017695)
chr8 (185-292)||(7396-7504)
chr8 (15-59)||(9461450-9461494)
[»] chr3 (12 HSPs)
chr3 (96-177)||(34661173-34661254)
chr3 (181-292)||(20974933-20975045)
chr3 (90-169)||(18658483-18658562)
chr3 (207-328)||(7463764-7463886)
chr3 (221-332)||(7481876-7481988)
chr3 (203-255)||(20961039-20961091)
chr3 (185-292)||(1741390-1741498)
chr3 (263-348)||(7482956-7483041)
chr3 (185-309)||(10749321-10749446)
chr3 (185-309)||(10997880-10998002)
chr3 (262-309)||(11312991-11313038)
chr3 (96-150)||(10427199-10427253)
[»] chr2 (17 HSPs)
chr2 (185-348)||(14243925-14244089)
chr2 (203-360)||(34404908-34405058)
chr2 (96-177)||(29141586-29141667)
chr2 (185-309)||(32519158-32519283)
chr2 (185-292)||(15075149-15075257)
chr2 (220-343)||(43236542-43236666)
chr2 (97-176)||(29035110-29035189)
chr2 (96-174)||(31643245-31643323)
chr2 (185-256)||(13646083-13646154)
chr2 (185-256)||(13652119-13652190)
chr2 (185-292)||(20911403-20911510)
chr2 (239-348)||(7981104-7981214)
chr2 (185-292)||(1150210-1150318)
chr2 (383-440)||(34404812-34404871)
chr2 (183-292)||(19606918-19607028)
chr2 (239-292)||(43237709-43237763)
chr2 (201-249)||(15073995-15074043)
[»] chr5 (11 HSPs)
chr5 (90-177)||(20070844-20070931)
chr5 (98-177)||(37042209-37042288)
chr5 (96-177)||(19576838-19576919)
chr5 (185-309)||(32052480-32052605)
chr5 (185-292)||(25253359-25253467)
chr5 (185-292)||(25317150-25317258)
chr5 (90-177)||(28662552-28662639)
chr5 (96-177)||(43361018-43361099)
chr5 (180-249)||(27753670-27753739)
chr5 (185-289)||(32052227-32052332)
chr5 (96-176)||(41817821-41817901)
[»] scaffold0003 (1 HSPs)
scaffold0003 (90-177)||(303418-303505)
[»] chr6 (12 HSPs)
chr6 (185-309)||(13480211-13480336)
chr6 (185-292)||(15819763-15819871)
chr6 (180-309)||(5064591-5064721)
chr6 (177-309)||(737953-738086)
chr6 (104-175)||(13405027-13405098)
chr6 (185-343)||(22540003-22540162)
chr6 (180-289)||(23292020-23292130)
chr6 (96-174)||(7536881-7536957)
chr6 (220-309)||(21880620-21880710)
chr6 (207-288)||(22540774-22540856)
chr6 (185-249)||(20560931-20560995)
chr6 (180-292)||(20994817-20994929)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 191 - 440
Target Start/End: Original strand, 53752245 - 53752511
Alignment:
191 atgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgacttttg 289  Q
    ||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
53752245 atgtgtttcatccctgcaaatggggctcgtttgaattttcgtctctatacttactaatcctcccaaaccttccctgcatttactaatcatttgacttttg 53752344  T
290 gtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatgatgtggtgtaatctgact--------------atgactagccaaatt 375  Q
    |||  |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||              |||||||| ||||||    
53752345 gtcctaattacatctgattacttatgtgtcacataattagtcacgtggcaatgatgtggcgtaatctgactggaaaaaaaaatggatgactaggcaaatt 53752444  T
376 acacacgaaatgaccattttacccttaatgaaactacaca--tgtgaaatgaccattctaccccttt 440  Q
    |||||||||||||||||||| |||||||||||||||||||  ||| ||||||||||||| |||||||    
53752445 acacacgaaatgaccattttgcccttaatgaaactacacacgtgttaaatgaccattctgccccttt 53752511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 53753515 - 53753351
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctccc-aaaccttcctgcaattactaatcatttga 283  Q
    ||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||    
53753515 ttaaatatgtgtttcatccctataaatagtgctcgtttgaattttcgtccctatacttattaatcctcccaaaactttcctgcaattactaatcatttga 53753416  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatgatgtgg 348  Q
    |||||||||  |||||||||||| | |||| ||| ||| | |||| |||| |||| |||||||||    
53753415 cttttggtcctaattacatctaaatgcttacgtggcacgtgattaatgacatggcaatgatgtgg 53753351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 360
Target Start/End: Original strand, 13231278 - 13231418
Alignment:
221 ttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgtc 319  Q
    ||||||||| |||||| ||||||||||||||||||||  |||| |||||||| |||||| ||||  |||||||  ||| |||| | |||||||||||| |    
13231278 ttgaattttagtccctgtacttactaatcctcccaaaatttccctgcaattattaatcacttgaaatttggtccaaatcacatttgattacttatgtggc 13231377  T
320 acataattagtgacgtggcgatgatgtggtgtaatctgact 360  Q
    |||| | |||||| |||||||||||||||  ||||||||||    
13231378 acatgactagtgatgtggcgatgatgtggcttaatctgact 13231418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 36801526 - 36801613
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||   |||||||| ||||| ||| ||||||||||||||||||||||    
36801526 ataaattaaagttgtaataaacattaagtacgaagttgagataaaggagtttgaccaaaaacttacggtggatacttaaataattaca 36801613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 18735639 - 18735557
Alignment:
96 taaagttgtaataaacattaagtaca-aagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||| ||||||||||||  |||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||    
18735639 taaagttgtaatcaacattaagtacttaagttgaaatgacagagtttgactaaaaagtaagggtggatacttaaataattaca 18735557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 18669363 - 18669282
Alignment:
96 taaagttgtaataaacattaagtaca-aagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    |||||||||||| ||||||||||||  |||||||||| ||  |||||||||||||| |||||||||||||||||||||||||    
18669363 taaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggtggatacttaaataattac 18669282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 18708133 - 18708052
Alignment:
96 taaagttgtaataaacattaagtaca-aagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    |||||||||||| ||||||||||||  |||||||||| ||  |||||||||||||| |||||||||||| ||||||||||||    
18708133 taaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggtggatatttaaataattac 18708052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 18715379 - 18715298
Alignment:
96 taaagttgtaataaacattaagtacaa-agttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    |||||||||||| ||||||||||||   ||||||||| ||  |||||||||||||| |||||||||||||||||||||||||    
18715379 taaagttgtaatcaacattaagtacgcgagttgaaatgacggagtttgactaaaaagttagggtggatacttaaataattac 18715298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 5734781 - 5734702
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaa 169  Q
    ||||| ||||||||||||||  ||||||||| |||||||||| ||  |||||||||||||| |||||||| |||||||||    
5734781 ataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaagttagggtgtatacttaaa 5734702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 7777277 - 7777198
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataatta 175  Q
    |||| ||||||||| |||||||||| |||||||||| ||  |||||||||||| | ||||| || |||||||||||||||    
7777277 taaaattgtaataagcattaagtacgaagttgaaatgacggagtttgactaaacagttaggatgtatacttaaataatta 7777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 35602538 - 35602467
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||| ||||||||| |||||| |||||||||||||||||||    
35602538 ttaaatatgtgtccagtccctgcaaataggcctcggttgaattttagtccctgtacttactaatcctcccaa 35602467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 9045752 - 9045833
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||||||||||| |  ||||||||||  | | |||||||||||||  ||||||||||| |||||||| ||||    
9045752 taaagttgtaataaacattaagcaagaagttgaaatggcgatgtttgactaaaaagctagggtggatagttaaataactaca 9045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 12691786 - 12691678
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacc-ttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||| ||||||  | ||||||||||| |||| ||   ||||||| || |||||||||||    
12691786 ttaaatatgtctttcgtccctgcaaatataggtcatttgaatttttgtccctgaagttactaatccttccaatccgcccctgcaaatattaatcatttga 12691687  T
284 cttttggtc 292  Q
    |||||||||    
12691686 cttttggtc 12691678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 3232612 - 3232518
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatca 278  Q
    |||||||||| | | || ||||||||||||||||||||||||||| |||||  |||||  |||||| ||||||  |||| |||||||| ||||||    
3232612 ttaaatatgtttatagtccctgcaaatagggctcgtttgaatttttgtcccagtacttgttaatccccccaaaatttccttgcaattattaatca 3232518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 10128709 - 10128779
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctccca 255  Q
    |||||||||| | | || ||||||||||||| |||||||||||||  ||| | ||||||||||||||||||    
10128709 ttaaatatgtttatagtccctgcaaatagggttcgtttgaattttactccatgtacttactaatcctccca 10128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 10394318 - 10394241
Alignment:
100 gttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||| |||||||||| |||||||||| |   ||||||||||||   ||||| | ||||||||||||||||||    
10394318 gttgtaataagcattaagtacgaagttgaaatgaaggagtttgactaaattgttaggatagatacttaaataattaca 10394241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 12691444 - 12691534
Alignment:
220 tttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgacttttggtctcaattacatctaatta 309  Q
    |||||||||||||||||  | ||||||||||| |||| |  ||| | ||| || ||||||||||||||||||||  |||||||||| ||||    
12691444 tttgaattttcgtccctgaagttactaatccttccaatctgtccctacaaatattaatcatttgacttttggtcctaattacatctgatta 12691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 489374 - 489443
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||| ||||||| || |||||| ||||||||||  | |||||||||||| |||||||| | |||||||||    
489374 ttggcttaaataggtctttcgtccctgcaaatataggtcgtttgaatttccgtccctaaatttactaatc 489443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 515166 - 515235
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||| ||||||| || |||||| ||||||||||  | |||||||||||| |||||||| | |||||||||    
515166 ttggcttaaataggtctttcgtccctgcaaatataggtcgtttgaatttccgtccctaaatttactaatc 515235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 47980688 - 47980813
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    ||||||| || |||||| ||||||||||  |  | |||||||||||||||||  | ||||| ||||| |||| |  ||| ||||| || |||||||||||    
47980688 ttaaataggtctttcgtccctgcaaatatagaccatttgaattttcgtccctgaagttactgatccttccaatctatccctgcaaatattaatcatttga 47980787  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||| ||  |||||||||| ||||    
47980788 cttttgatcctaattacatctgatta 47980813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 28533780 - 28533929
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttga 283  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
28533780 ttaaatatgtgtttcgtccctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttccctgcaattactaatcatttga 28533879  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgac 333  Q
    |||||||||  |||||||||||| | |||| ||| ||| | |||||||||    
28533880 cttttggtcctaattacatctaaatgcttacgtggcacgtgattagtgac 28533929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 6056379 - 6056504
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||| | ||||| ||||| |||| |  | ||||||| || |||||||||||    
6056379 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctaaaattactgatccttccaatatgtccctgcaaatattaatcatttga 6056478  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||||||  |||||||||| ||||    
6056479 cttttggtcctaattacatctgatta 6056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 9246564 - 9246638
Alignment:
103 gtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||||| |||||||||| |||||||||| | | ||||||| |||||| |||||||||||| |||||||||||||    
9246564 gtaataagcattaagtacgaagttgaaatgatagagtttgattaaaaatttagggtggatatttaaataattaca 9246638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 21852433 - 21852369
Alignment:
112 attaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    ||||||||| |||||||||| ||  ||||| |||||||| |||||||||||||||||||||||||    
21852433 attaagtacgaagttgaaatgacggagtttaactaaaaagttagggtggatacttaaataattac 21852369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 45040291 - 45040378
Alignment:
90 ataaactaaagttgtaataaa--cattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataatta 175  Q
    ||||| |||||||||||||||  |||||||||  |||||||||| || ||||||||||||||  |||||  |||||||||||||||||    
45040291 ataaattaaagttgtaataaaaacattaagtaagaagttgaaatgacgaagtttgactaaaaggttaggacggatacttaaataatta 45040378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 2953850 - 2953727
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatca 278  Q
    |||| |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |    ||||||| || ||||||    
2953850 ttggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatca 2953751  T
279 tttgacttttggtctcaattacat 302  Q
    ||||| ||||||||  ||||||||    
2953750 tttgatttttggtcctaattacat 2953727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 5926524 - 5926637
Alignment:
187 aaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttgact 285  Q
    |||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |    |||||||  | |||||||||||||    
5926524 aaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaacattaatcatttgact 5926623  T
286 tttggtctcaatta 299  Q
    |||||||| |||||    
5926624 tttggtcttaatta 5926637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 25415225 - 25415100
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttga 283  Q
    |||||||| | |||||| ||||||||||    || ||||||||||||| |||  | ||||||||||| |||| |  ||||||||| || ||| |||||||    
25415225 ttaaatatatttttcgtccctgcaaatataagtcatttgaattttcgttcctgaagttactaatccttccaatatgttcctgcaaatattaaccatttga 25415126  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||||||  |||||||||| ||||    
25415125 cttttggtcctaattacatctgatta 25415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 49002878 - 49002987
Alignment:
184 tttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatcatttg 282  Q
    ||||||||||| |||||| ||||||||||  | || ||||||||||||||| |  | ||||||||||| |||| |    ||||||| || ||||||||||    
49002878 tttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccatgaagttactaatccttccaatctgcccctgcaaatattaatcatttg 49002977  T
283 acttttggtc 292  Q
    ||||||||||    
49002978 acttttggtc 49002987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 2953467 - 2953575
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| |||| |||||  | || |||||||||||||||||| | |||||||||||  ||| |    ||||||| || |||||||||||    
2953467 ttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctaaagttactaatcctttcaatctgcccctgcaaatattaatcatttga 2953566  T
284 cttttggtc 292  Q
    |||||||||    
2953567 cttttggtc 2953575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 25030669 - 25030629
Alignment:
137 agtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
25030669 agtttgactaaaaagttaaggtggatacttaaataattaca 25030629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 33347786 - 33347677
Alignment:
196 tttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgacttttggtctc 294  Q
    |||||| ||||||||||  | || ||||||||||||||| |  | ||||||||||| |||| |   || ||||| || ||||||||||||||||||||      
33347786 tttcgtccctgcaaatataggtcatttgaattttcgtccttgaagttactaatccttccaatctgcccttgcaaatattaatcatttgacttttggtcct 33347687  T
295 aattacatct 304  Q
    ||||||||||    
33347686 aattacatct 33347677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 46364577 - 46364641
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | |||||||||    
46364577 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatc 46364641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 39527178 - 39527019
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||||||| || |||| ||||||||  ||||||||||||||||||| |||||||||||||| | ||| ||||| ||||||||||||||||||||    
39527178 ttaaatatgtgtttagtccctgtaaatagggtccgtttgaattttcgtccctgtacttactaatccttcaaaaacttccctgcaattactaatcatttga 39527079  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatga 343  Q
    ||||||  |  |||||||||| |||||||||||||||||||||||||||| |||||||||    
39527078 cttttgaccctaattacatctgattacttatgtgtcacataattagtgacatggcgatga 39527019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 16649252 - 16649329
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataat 173  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
16649252 taaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatacttaaataat 16649329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 17623613 - 17623690
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataat 173  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
17623613 taaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatacttaaataat 17623690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 22493703 - 22493786
Alignment:
94 actaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||||||||||||||||  ||||||| | || ||||||||||||||| ||||||| ||||||||||||||||||    
22493703 actaaagttgtaataaacattaagtacgtagttgaattgacgaagtttgactaaaaagttagggttgatacttaaataattaca 22493786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 20389065 - 20389152
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||| ||||||||||||||  ||||| |||||||||||||| |    ||||||||||||| ||||||||||||||||||||||||||    
20389065 ataaattaaagttgtaataagtattaaatacaaagttgaaattatggggtttgactaaaaagttagggtggatacttaaataattaca 20389152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 30781444 - 30781378
Alignment:
111 cattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||| |||||||    
30781444 cattaagtacaaagttgaaatgacgaagtttgactaaaaaattaaggtggatatttaaacaattaca 30781378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 39525679 - 39525778
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttga 283  Q
    ||||||||||||||  | ||||||||||||   ||||||||||||||||| | ||||||||||||||  |||| ||| ||||||||||||||||| ||||    
39525679 ttaaatatgtgtttaatccctgcaaataggatccgtttgaattttcgtccttgtacttactaatcctttcaaaacttccctgcaattactaatcacttga 39525778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 3226071 - 3226180
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttga 283  Q
    |||||||||||| | || | ||||||||||| || |||||||||| ||| ||||||||||||||||| | || |   || ||||||||||||||||||||    
3226071 ttaaatatgtgtgtggtccgtgcaaatagggttcatttgaatttttgtctctatacttactaatccttcaaatattgtcatgcaattactaatcatttga 3226170  T
284 cttttggtct 293  Q
     |||||||||    
3226171 gttttggtct 3226180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 6961543 - 6961465
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||| ||   ||||||||||||||||  |  |||||||||||||| |||||||| |||||||||||||||||    
6961543 taaagttgtaataagca---agtacaaagttgaaatggcggagtttgactaaaaagttagggtgaatacttaaataattaca 6961465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 47733023 - 47733094
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| || ||||||||||||||||    
47733023 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtaattactaatcctcccaa 47733094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 47739094 - 47739023
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| || ||||||||||||||||    
47739094 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtatttactaatcctcccaa 47739023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 47082038 - 47082094
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccct 236  Q
    |||||||||||| || |||||| ||||||||||  | || |||||||||||||||||    
47082038 ttggtttaaataagtctttcgtccctgcaaatatagttcatttgaattttcgtccct 47082094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 43073566 - 43073730
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttga 283  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||| |||||||||||||||||| | |    
43073566 ttaaatatgtgtttcgtccctgcaaatagggctcgtttgaatttttgtccctacacttaccaatcctcctaaaccttccctgcaattactaatcatatca 43073665  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatgatgtgg 348  Q
    |||||| ||  |||||||||||| | |||| ||| ||| | |||| |||| || | |||||||||    
43073666 cttttgatcctaattacatctaaatgcttacgtggcacgtgattaatgacttgacaatgatgtgg 43073730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 43074567 - 43074486
Alignment:
361 atgactagccaaattacacacgaaatgaccattttacccttaatgaaacta--cacatgtgaaatgaccattctaccccttt 440  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||||    
43074567 atgactagccaaattacacacgaaatgaccattttgcccttaatgaaactacacacatgtgaaacgaccattctaccccttt 43074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 43074802 - 43074736
Alignment:
14 aaaaattgatttcgagtgagttgattctttaaaattgattctgactgaaagcaagttaaatcagtgg 80  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||    
43074802 aaaaattgattcccactgagttgattctttaaaattgattctgactgaaaacaagttaaatcagtgg 43074736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 43074642 - 43074595
Alignment:
184 tttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcg 231  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
43074642 tttaaatatgtgtttcgtccctgcaaatagggctcgtttgaattttcg 43074595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 8995469 - 8995388
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||||||||||  || |||||||||| |   |||||||||||||| ||| ||| ||||||||||||||||||    
8995469 taaagttgtaataaacattaaacacgaagttgaaatgatggagtttgactaaaaacttatggttgatacttaaataattaca 8995388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 36109264 - 36109191
Alignment:
104 taataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||| |||||| ||| |||||||||| |   |||||||||||||| ||||||||||||||||||||||||||    
36109264 taataagcattaattacgaagttgaaatgatggagtttgactaaaaagttagggtggatacttaaataattaca 36109191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 25382504 - 25382588
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaa--agtttgactaaaaaattagggtggatacttaaataa 172  Q
    ||||| |||||||||||||||||| |||||| |||||||||| | ||  |||||||| ||||  |||||||| ||||||||||||    
25382504 ataaattaaagttgtaataaacatcaagtacgaagttgaaatgataaggagtttgacaaaaatgttagggtgaatacttaaataa 25382588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 36574855 - 36574984
Alignment:
220 tttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgt 318  Q
    |||||| |||| |||||  ||||||||||||||||||| ||| ||||||| || ||||||||||| ||||||||  ||  |||| |||||||  | |||     
36574855 tttgaaatttcatccctgaacttactaatcctcccaaatcttccctgcaaatattaatcatttgagttttggtcctaaacacatttaattaccgacgtgg 36574954  T
319 cacataattagtgacgtggcgatgatgtgg 348  Q
    ||||| |||||||| |||| ||||| ||||    
36574955 cacatgattagtgaggtggtgatgacgtgg 36574984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 41767616 - 41767687
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| |||||||||||||||||||    
41767616 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 41767687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 41773711 - 41773640
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| |||||||||||||||||||    
41773711 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 41773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 547805 - 547691
Alignment:
196 tttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttc-ctgcaattactaatcatttgacttttggtctc 294  Q
    |||||| ||||||||||  | || |||||||||||||||||| | ||||||||||| |||| |   | || ||| || ||||||||||||||||||||      
547805 tttcgtccctgcaaatatagatcatttgaattttcgtccctaaagttactaatccttccaatctgccactacaaatattaatcatttgacttttggtcct 547706  T
295 aattacatctaatta 309  Q
    |||||||||| ||||    
547705 aattacatctgatta 547691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 11636246 - 11636165
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||| ||| |||||  ||| || ||||||| || |||||| |||||||| ||||| || |||||||||||||||||    
11636246 taaagttgtagtaagcattatatacgaatttgaaatgacgaagtttaactaaaaagttaggttgtatacttaaataattaca 11636165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 17836927 - 17836853
Alignment:
104 taataaacattaagtacaaagttgaaataacaaagtttgactaaaaaa-ttagggtggatacttaaataattaca 177  Q
    |||||| |||||| ||| |||||||||||||  |||||| | |||| | |||| |||||||||||||||||||||    
17836927 taataagcattaattacgaagttgaaataacggagtttggcaaaaacagttagagtggatacttaaataattaca 17836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 27856823 - 27856872
Alignment:
262 cctgcaattactaatcatttgacttttggtctcaattacatctaattact 311  Q
    ||||||| || ||||||||||||||||||||| |||||||| | ||||||    
27856823 cctgcaaatattaatcatttgacttttggtcttaattacatttgattact 27856872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 32017642 - 32017695
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaa 149  Q
    |||| ||||||||| ||||||||||| ||||||||| ||  |||||||||||||    
32017642 taaaattgtaataagcattaagtacagagttgaaatgacggagtttgactaaaa 32017695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 7396 - 7504
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || ||||||||||| |||||  | |||||||| || |||| |  | ||| ||| || |||||||||||    
7396 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcttccctgaagttactaattcttccaacatgtccctacaaatattaatcatttga 7495  T
284 cttttggtc 292  Q
    |||||||||    
7496 cttttggtc 7504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 9461450 - 9461494
Alignment:
15 aaaattgatttcgagtgagttgattctttaaaattgattctgact 59  Q
    ||||||||||| |||| | |||||| |||||||||||||||||||    
9461450 aaaattgattttgagttaattgattatttaaaattgattctgact 9461494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 34661254 - 34661173
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||  ||||||||||||||||||||||    
34661254 taaagttgtaataaacattaagtacgaagttgaaatgacagagtttgactaaaaagtttaggtggatacttaaataattaca 34661173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 20974933 - 20975045
Alignment:
181 tggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctccc-aaaccttcctgcaattactaatcat 279  Q
    |||||||||||||| | | || ||||||||||||||||  |||||||||||||| | |||||||||||||||||      |||||||||||| |||||||    
20974933 tggtttaaatatgtctatagtccctgcaaatagggctcagttgaattttcgtccatgtacttactaatcctcccttttttttcctgcaattattaatcat 20975032  T
280 ttgacttttggtc 292  Q
    |||| ||||||||    
20975033 ttgagttttggtc 20975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 18658562 - 18658483
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaa 169  Q
    ||||| ||||||||||||||  ||||||||| |||||||||| ||  |||||||||||||| |||||||| |||||||||    
18658562 ataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaagttagggtgtatacttaaa 18658483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 7463764 - 7463886
Alignment:
207 caaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacc-ttcctgcaattactaatcatttgacttttggtctcaattacatcta 305  Q
    |||||||| |||  ||||||||||||||| |||||||||||||||||||||   ||  |||||||| ||||||||||| ||||||||  |||| ||| |     
7463764 caaataggactcacttgaattttcgtccccatacttactaatcctcccaaaaaatttatgcaattattaatcatttgagttttggtcataatttcatttg 7463863  T
306 attacttatgtgtcacataatta 328  Q
    ||||||||| || ||||| ||||    
7463864 attacttatatgacacatgatta 7463886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 7481876 - 7481988
Alignment:
221 ttgaattttcgtccctatacttactaatcctccc-aaaccttcctgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgtc 319  Q
    |||||||||||||||||||||||||||| ||||| |||  | |||||||||| ||||||||||  ||||||||  |||  ||| | ||||||||| || |    
7481876 ttgaattttcgtccctatacttactaattctcccgaaatttccctgcaattattaatcatttgggttttggtcataatctcatttgattacttatatggc 7481975  T
320 acataattagtga 332  Q
    |||| ||||||||    
7481976 acatgattagtga 7481988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 20961039 - 20961091
Alignment:
203 cctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctccca 255  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
20961039 cctgcaaatagggctcagttgaattttcgcccctatacttactaatcctccca 20961091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 1741390 - 1741498
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |   || ||||| || |||||||||||    
1741390 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatattaatcatttga 1741489  T
284 cttttggtc 292  Q
    |||||||||    
1741490 cttttggtc 1741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 7483041 - 7482956
Alignment:
263 ctgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatgatgtgg 348  Q
    ||||||||||||||||||||| ||||||||  |||   || | ||| |||||||| |||||||||| ||| |||||||||| ||||    
7483041 ctgcaattactaatcatttgagttttggtcctaatctaatttgattgcttatgtggcacataattaatgaggtggcgatgacgtgg 7482956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 10749321 - 10749446
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatcatttga 283  Q
    ||||||| || |||||| |||| |||||  | || |||||||||||||||||  | ||||||||||| | || |  | ||||||| || |||||||||||    
10749321 ttaaataggtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttctaatctatccctgcaaatattaatcatttga 10749420  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||||||  |||||||||| ||||    
10749421 cttttggtcctaattacatctgatta 10749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 10997880 - 10998002
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcctgcaattactaatcatttgac 284  Q
    |||||||||| ||| || ||||||||||  | || |||||||||||||||||  | ||||||||||| ||||   | |||| || || ||||||||||||    
10997880 ttaaatatgtattttgttcctgcaaatacaggtcatttgaattttcgtccctgaagttactaatccttccaa--ttccctgtaaatattaatcatttgac 10997977  T
285 ttttggtctcaattacatctaatta 309  Q
    ||||| ||  |||||||||| ||||    
10997978 ttttgatcctaattacatctgatta 10998002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 11313038 - 11312991
Alignment:
262 cctgcaattactaatcatttgacttttggtctcaattacatctaatta 309  Q
    ||||||| |||||||||||||||||||||||  |||||||||| ||||    
11313038 cctgcaaatactaatcatttgacttttggtcctaattacatctgatta 11312991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 10427199 - 10427253
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaa 150  Q
    ||||||||||||||  ||||| ||| |||||||||| ||| ||||||||||||||    
10427199 taaagttgtaataagtattaattacgaagttgaaatgacatagtttgactaaaaa 10427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 14244089 - 14243925
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaat-cctcccaaaccttcctgcaattactaatcatttga 283  Q
    |||||||||||| | |  ||||||||||||||||||||||||||| |||| | |||||| || | |||||  ||  | ||||||| ||||||||||||||    
14244089 ttaaatatgtgtatagctcctgcaaatagggctcgtttgaatttttgtccatgtacttattattccctccacaatttccctgcaaatactaatcatttga 14243990  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatgatgtgg 348  Q
     |||| |||  |||  ||| | |||||||||||| ||||| ||||||||||| ||||||||||||    
14243989 gttttagtcctaatctcatttgattacttatgtggcacatgattagtgacgtagcgatgatgtgg 14243925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 360
Target Start/End: Complemental strand, 34405058 - 34404908
Alignment:
203 cctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttgacttttggtctcaattaca 301  Q
    ||||||||||||||||  ||||||||| |||| | ||||||||||||||||||||  || ||||||| | |||||||||||| |||||||| |||    |    
34405058 cctgcaaatagggctcaattgaattttagtccatgtacttactaatcctcccaaaatttccctgcaaattctaatcatttgagttttggtc-caa----a 34404964  T
302 tctaattacttatgtgtcacataattagtgacgtggcgatgatgtggtgtaatctgact 360  Q
    ||| ||   ||||||| |||||||| ||||| |||||||||| ||||  ||||||||||    
34404963 tctcat---ttatgtgacacataataagtgatgtggcgatgacgtggcataatctgact 34404908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 29141586 - 29141667
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||| ||||||||||||||| || |||||||||| |   ||||||||||||||  ||||||||||| |||||||||||||    
29141586 taaagtcgtaataaacattaagcacgaagttgaaatgatggagtttgactaaaaagatagggtggatatttaaataattaca 29141667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 32519158 - 32519283
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa-accttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |   |||||||| || |||||||||||    
32519158 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaaattactaatccttccaatatgctcctgcaaatattaatcatttga 32519257  T
284 cttttggtctcaattacatctaatta 309  Q
    ||||||||   |||||||||| ||||    
32519258 cttttggttctaattacatctgatta 32519283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 15075257 - 15075149
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| | | || || |||||||||| | ||||||||||| ||| || |||||||||||||| |||||  |||| |||||||||||||||||| |    
15075257 ttaaatatgtctatagtcccagcaaatagggtttgtttgaattttagtctctgtacttactaatccttccaaaatttccatgcaattactaatcatttaa 15075158  T
284 cttttggtc 292  Q
     ||||||||    
15075157 tttttggtc 15075149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 43236542 - 43236666
Alignment:
220 tttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgt 318  Q
    |||||| |||| |||||  ||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||  ||  |||| |||||||  | |||     
43236542 tttgaaatttcatccctgaacttactaatcctcccaaaccttccctgcaaatattaatcatttgagttttggtcctaaacacatttaattaccgacgtgg 43236641  T
319 cacataattagtgacgtggcgatga 343  Q
    ||||| |||||||| |||| |||||    
43236642 cacatgattagtgaggtggtgatga 43236666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 29035110 - 29035189
Alignment:
97 aaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    |||||||||||||||||||||||| |||||||||| ||  |||||||||| ||| ||| |||| ||||||| | ||||||    
29035110 aaagttgtaataaacattaagtacgaagttgaaatgacggagtttgactacaaagttaaggtgaatacttataaaattac 29035189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 31643245 - 31643323
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataatt 174  Q
    |||||||||||||| |||||| ||| |||||||| | ||  |||| |||| |||||||||| |||||||||||||||||    
31643245 taaagttgtaataagcattaaatacgaagttgaactgacggagttcgactgaaaaattaggatggatacttaaataatt 31643323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 13646083 - 13646154
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| |||||||||||||||||||    
13646083 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 13646154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 13652190 - 13652119
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaa 256  Q
    ||||||||||||   || |||||||||||| |||  ||||||||| |||||| |||||||||||||||||||    
13652190 ttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 13652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 20911510 - 20911403
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcctgcaattactaatcatttgac 284  Q
    |||||||||| |||||| |||| |||||  | || |||||||||| ||||||  | ||||||||| | |||| |  |||||||| || ||||||||||||    
20911510 ttaaatatgtctttcgtccctgtaaatataggtcatttgaatttttgtccctgaagttactaatcattccaatctgtcctgcaaatattaatcatttgac 20911411  T
285 ttttggtc 292  Q
    ||||||||    
20911410 ttttggtc 20911403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Original strand, 7981104 - 7981214
Alignment:
239 acttactaatcctcccaaacctt-cctgcaattactaatcatttgacttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtgg 337  Q
    ||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||  ||  |||| |||||||  | ||| ||||| |||||||| ||||    
7981104 acttactaatcctcccaaaccttccctgcaaatattaatcacttgagttttggtcctaaacacatttaattaccgacgtggcacatgattagtgaggtgg 7981203  T
338 cgatgatgtgg 348  Q
     ||||| ||||    
7981204 tgatgacgtgg 7981214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 1150318 - 1150210
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | |||||||||||  ||| |    ||||||| || |||||||||||    
1150318 ttaaatatgtctttcgtgcctgcaaatataggtcatttgaattttcgtccctgaaattactaatcctttcaatctgcccctgcaaatattaatcatttga 1150219  T
284 cttttggtc 292  Q
    |||||||||    
1150218 cttttggtc 1150210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 34404871 - 34404812
Alignment:
383 aaatgaccattttacccttaatgaaactacacatgtg--aaatgaccattctaccccttt 440  Q
    ||||||||||| | |||||||| |||||| |||||||  |||||||||||||||||||||    
34404871 aaatgaccattctgcccttaattaaactagacatgtgcaaaatgaccattctaccccttt 34404812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 19606918 - 19607028
Alignment:
183 gtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttc-ctgcaattactaatcattt 281  Q
    |||||||||||| |||||| |||| |||||    || |||||||||||||||||  | ||||||||||| |||| |  ||  ||||| || |||||||||    
19606918 gtttaaatatgtctttcgtccctgtaaatatatgtcatttgaattttcgtccctgaagttactaatccttccaatctgtcgttgcaaatattaatcattt 19607017  T
282 gacttttggtc 292  Q
    |||||||||||    
19607018 gacttttggtc 19607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 43237763 - 43237709
Alignment:
239 acttactaatcctcccaaacctt-cctgcaattactaatcatttgacttttggtc 292  Q
    ||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||    
43237763 acttactaatcctcccaaaccttccctgcaaatattaatcacttgagttttggtc 43237709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 15073995 - 15074043
Alignment:
201 tacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||||||| |||| ||||||||||||||| ||||||  |||||||||||    
15073995 tacctgcagatagagctcgtttgaattttagtccctgcacttactaatc 15074043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 20070844 - 20070931
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||| ||||||||||||||  |||||  |||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||    
20070844 ataaattaaagttgtaataagtattaaacacaaagttgaaataatggagtttgactaaaaagttagggtggatacttaaataattaca 20070931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 37042209 - 37042288
Alignment:
98 aagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||    
37042209 aagttgtaataagcatttaatacgaagttgaaataacaaagtttgactaaaaagttaggatggatgcttaaatagttaca 37042288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 19576838 - 19576919
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||  ||| |||||| |||||||||| ||| | |||||||||||| || ||||| |||||||||||||||||    
19576838 taaagttgtaatacgcataaagtacgaagttgaaatgacagaatttgactaaaaagtttgggtgaatacttaaataattaca 19576919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 32052605 - 32052480
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |    ||||||| || |||||||||||    
32052605 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttga 32052506  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||||||  |||||||||| ||||    
32052505 cttttggtcctaattacatctgatta 32052480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 25253467 - 25253359
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |   || ||||| ||||||||||||||    
25253467 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatactaatcatttga 25253368  T
284 cttttggtc 292  Q
    |||||||||    
25253367 cttttggtc 25253359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 25317258 - 25317150
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |   || ||||| ||||||||||||||    
25317258 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatactaatcatttga 25317159  T
284 cttttggtc 292  Q
    |||||||||    
25317158 cttttggtc 25317150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 28662639 - 28662552
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||| |||||||||||||| |||||| |||  ||||||||| ||  ||||||| |||||| ||| |||| |||||||||||||||||    
28662639 ataaattaaagttgtaataagcattaaatacggagttgaaatgacggagtttgattaaaaagttatggtgaatacttaaataattaca 28662552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 43361018 - 43361099
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    |||||||||||||| ||| |||||| ||||| ||||  || |||||| ||| ||| |||||||| |||||||||||||||||    
43361018 taaagttgtaataagcatcaagtaccaagttaaaatgtcagagtttggctataaagttagggtgtatacttaaataattaca 43361099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 27753670 - 27753739
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||| |||||||||| |||||| ||||||||||  | || |||||||||||||||||| | |||||||||    
27753670 ttggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctaaagttactaatc 27753739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 32052227 - 32052332
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacc-ttcctgcaattactaatcatttga 283  Q
    |||||||||| |||||| |||| |||||  | || |||||||||||||||||  | ||||||||||| |||| ||   ||||||| || |||||||||||    
32052227 ttaaatatgtttttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatccgcccctgcaaatattaatcatttga 32052326  T
284 cttttg 289  Q
    ||||||    
32052327 cttttg 32052332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 41817901 - 41817821
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattac 176  Q
    |||| |||||||||||||||||||  |||||||||| ||  |||||||||||||  ||||||| |||| ||| | ||||||    
41817901 taaaattgtaataaacattaagtatgaagttgaaatgacggagtttgactaaaatgttagggtagatatttataaaattac 41817821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 303418 - 303505
Alignment:
90 ataaactaaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataattaca 177  Q
    ||||| ||||||||||||||  |||||  ||||||||||||| |   |||||||||||||| ||||||||||||||||||||||||||    
303418 ataaattaaagttgtaataagtattaaacacaaagttgaaatgatggagtttgactaaaaagttagggtggatacttaaataattaca 303505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 13480211 - 13480336
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  |  | |||||||||||||||||  | ||||||||||| |||| |   || ||||| || |||||||||||    
13480211 ttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttga 13480310  T
284 cttttggtctcaattacatctaatta 309  Q
    |||||||||  |||||||||||||||    
13480311 cttttggtcctaattacatctaatta 13480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 15819871 - 15819763
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttga 283  Q
    |||||||||| |||||| ||||||||||  | || |||||||||||||||||  | ||||||||||| |||| |   || ||||| ||||||||||||||    
15819871 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctacccttgcaaatactaatcatttga 15819772  T
284 cttttggtc 292  Q
    |||||||||    
15819771 cttttggtc 15819763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 5064721 - 5064591
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatca 278  Q
    ||||||||||||||| ||||||  |||||||||  |  | |||||||||||||||||    ||||||||||| |||| |   || ||||| || ||||||    
5064721 ttggtttaaatatgtctttcgtctctgcaaatataggccatttgaattttcgtccctgaggttactaatccttccaatctgcccctgcaaatattaatca 5064622  T
279 tttgacttttggtctcaattacatctaatta 309  Q
    ||||||||||||||  |||||||||||||||    
5064621 tttgacttttggtcctaattacatctaatta 5064591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 738086 - 737953
Alignment:
177 acattggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaa 275  Q
    ||||||| |||||||||| |||||| ||||||||||  | || ||||||||||||||| |  | ||||||||||| |||| |    ||| ||| || |||    
738086 acattggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccatgaagttactaatccttccaatctgccccttcaagtattaa 737987  T
276 tcatttgacttttggtctcaattacatctaatta 309  Q
    |||||||||||||||||  |||||||||| ||||    
737986 tcatttgacttttggtcctaattacatctgatta 737953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 13405027 - 13405098
Alignment:
104 taataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataatta 175  Q
    |||||| ||||||  || |||||||||| ||  ||||||||||||||| |||| ||||||||||||||||||    
13405027 taataagcattaaacacgaagttgaaatgactgagtttgactaaaaaactaggatggatacttaaataatta 13405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 343
Target Start/End: Original strand, 22540003 - 22540162
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaacctt-cctgcaattactaatcatttga 283  Q
    |||||||||||||| || | || ||||||  |||  || | |||||||| |||||||||||||||||  ||||| || ||| ||||||| ||||||||||    
22540003 ttaaatatgtgtttagtccttgtaaatagatctcagttaagttttcgtcgctatacttactaatcctttcaaactttccctacaattaccaatcatttga 22540102  T
284 cttttggtctcaattacatctaattacttatgtgtcacataattagtgacgtggcgatga 343  Q
     |||||||   |||  ||| | ||||||| |||| ||  | |||||||||||||||||||    
22540103 attttggttctaatctcatttgattacttttgtggcaattgattagtgacgtggcgatga 22540162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 23292130 - 23292020
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaac-cttcctgcaattactaatca 278  Q
    |||| |||||||||| |||||| | ||||||||  | || |||||||||||||||||  | ||||||||||| |||| |  | ||||||| || ||||||    
23292130 ttggcttaaatatgtctttcgtccatgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctatccctgcaaatattaatca 23292031  T
279 tttgacttttg 289  Q
    |||||||||||    
23292030 tttgacttttg 23292020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 7536957 - 7536881
Alignment:
96 taaagttgtaataaacattaagtacaaagttgaaataacaaagtttgactaaaaaattagggtggatacttaaataatt 174  Q
    ||||||||||| ||||||||||| | ||||||||||   | |||||||||||||| | ||  |||||||||||||||||    
7536957 taaagttgtaacaaacattaagtgcgaagttgaaat--gagagtttgactaaaaagtaagtctggatacttaaataatt 7536881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 21880710 - 21880620
Alignment:
220 tttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgacttttggtctcaattacatctaatta 309  Q
    |||||||||||||||||  | ||||||||||| |||| |  ||| ||||| || ||| ||||||||||||||||  |||||||||| ||||    
21880710 tttgaattttcgtccctgaagttactaatccttccaatctatccctgcaaatattaagcatttgacttttggtcctaattacatctgatta 21880620  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 22540856 - 22540774
Alignment:
207 caaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcc-tgcaattactaatcatttgactttt 288  Q
    |||||| |||||| |||| ||||||||||||||||||||||| |  |||||| | || |||  ||||||||||||||| ||||    
22540856 caaatatggctcggttgagttttcgtccctatacttactaattcaaccaaacttgccatgcggttactaatcatttgagtttt 22540774  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 20560931 - 20560995
Alignment:
185 ttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatc 249  Q
    |||||||||| |||||| ||||||||||  | || ||||||||||||||||| || ||| |||||    
20560931 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgtagttattaatc 20560995  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 20994817 - 20994929
Alignment:
180 ttggtttaaatatgtgtttcgtacctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttcctgcaattactaatcat 279  Q
    |||| |||||||||| |||||| |||| |||||  | || |||||||||||||| ||  | ||||||||||| | || |   ||||||| || |||||||    
20994817 ttggcttaaatatgtctttcgtccctgtaaatatagttcatttgaattttcgtctctgaagttactaatccttctaatctgccctgcaaatattaatcat 20994916  T
280 ttgacttttggtc 292  Q
    || ||||||||||    
20994917 ttaacttttggtc 20994929  T

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